Glyma18g47741 - SoyBase

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Report for Sequence Feature Glyma18g47741

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57313933
stop:	57318035
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47741

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56270	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 2 \| chr5:22780816-22783137 FORWARD LENGTH=687	SoyBase	E_val: 2.00E-95	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009942	GO-bp	Annotation by Michelle Graham. GO Biological Process: longitudinal axis specification	SoyBase	N/A	ISS
GO:0030010	GO-bp	Annotation by Michelle Graham. GO Biological Process: establishment of cell polarity	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G7KRI3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7KRI3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EE11	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EE11 related cluster n=1 Tax=unknown RepID=UPI000233EE11	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma18g47741

Locus	Gene Symbol	Protein Name
	WRKY172	WRKY Transcription Factor

Expression Patterns of Glyma18g47741

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g47741 not represented in the dataset	Glyma18g47741 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47741

Paralog	Evidence	Comments
Glyma09g38581	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47741 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g242000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47741

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47741

Limit To All Plant Sequences

>Glyma18g47741.1   sequence type=CDS   gene model=Glyma18g47741   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAAGACAACCTTAACAACAATTGTGATGAGGAAAACTTTGTGTCTGACTCGAGAGGAAGAAAAAGAAGCATTGCTGAGAGAAGGGGTTTCAATTCCAATGCTGCAAGAATCAACACAGCACTGTTTCGCACTGCAACAACTTCAACAACAACCCCTTCACCTTCCCCTGCTGTTCGATCACCTCGTCTCACCATTCCCCCGGGCATTAGTCCCACTGCCTTGCTTGACTCTCCCATCATGCTTCCAAATTCTCAGGCCATATCTCCCACCGTTGGCTCTTTCTTCACGCTGCCACTTCTCAGCCATGAAGGATCAATGCTCACAACTGAACAAGGGAATGTGGATGTGTCAACCGCATTTGATGTCGCCGCCTCTTTCAAATTCAAGCCTCGTGGACATTTGGATCCTAATCCTTTGCCTCCTTTCCCTGCTTCTCTAAATCAGGTTTCTAGTCATTTCCACTCAGTAAAGGGAGAAAATAGAGAGAGCCACCTACTTGCTCAAGTTCAGCCACCATTAGATTTTTCATGCCAAGCAGATTTTTCAAAAGGCCATTCTGTGAAAAATAGTGAAGTGAATTCGTACAATGATATGAAAATGGTAAATGATGCGATTGTTAATGCCAATAATGTTGAGATGCCAATGTCTGGCTCTGAGGAAGTAAGTGATGAAAGCGCTATGCTGAAAAATGCTATCAATGGTGAGGATTTCGGAGGGCAACCTGCTTCAGAAGGAGAACAGAAAGAGGTATCCCATGCAACGGGAGCAGTAAGGACTTCAGAGGATGGCTATAATTGGAGGAAATATGGACAAAAACAGGTTAAAGGTAGTGAGTATCCCAGAAGCTATTATAAATGCACACAGCCTAATTGTCAGGTCAAGAAAAAGGTGGAACGATCCCATGACGGTCAAATAACGGAAATTATTTACAAGGGTGCTCATAACCATGCACAACCACACCCCGGACATCGAGCATCTTCACTTTCTACTGATGAGGTTTCAGACATGGCTGAAGACAGTACCTTAGCTAAAATTGAAGGTGGGTATGTCTGGAGAAATATTCAAACAGGATTAAAAGATACAAAACAAAGTTTTGATTGGAAGGCTGATGGACAGGAAAGGACATCATCAACTTCTGCTGTGACTGAGCTTTCAGATCCTATATCAACTAACAAAGCTAAATCTCTACGTATATTTGAATTGGAGGACACTCCAGAGCTTTCTTCTACACTTGCCAGTCATGATGATGATGAAGATGGGACCGCTCACGCACTTGTGTCGGCTGAAGACGAAGCTGAGAATGATGAATTGGAACCGAAAATAAGGAAGAAAGAGAGCTATGCAGTTGAACCAAATTTGCCCCCTACTAGGGCTGTTCGAGAGCCAAGAGTGGTTGTCCAAATTGAGAGTGATGTGGACATACTTGATGATGGTTACCGCTGGCGTAAGTATGGACAAAAGGTTGTCAAAGGAAATCCAAATCCTAGGAGCTACTACAAATGTACAAGTACTGGATGTATGGTAAGGAAACATGTGGAAAGGGCTTCACACAATCTGAAATATGTCCTTACTACTTATGAGGGAAAGCATAACCATGAAGTGCCCACTGCTAGAACCAACAATCAGGTAAACTCAAGTGATGGTGGTTTACCTCCCAATGGTGCTAATGGACAAGTTTCTCTTACATTACCAGGGAATGCTGGCATTCCAAAGCCCGAAACTCATCAAACTCTTGGACATCATTTTGATAGAAAACCGGAATTCAGCGACGAGTTTCTCAGGCCTAGTTTGGTTGGAAGTTTCGGGAATGATATGAAGTTTCGGCCTTCTTCCCTTTGCCAAATGAAGTATCCTTCCTTGAATAACGCCATGCCATATGGCTCCTATGGACTGAACCCTGAACGTTGCACTGCCCCTCAAGCTGGATCCATTCCCTCCATGTTCCCTGATTTTCCAATGCCACTTCCATTGAATCTTCCCTCATCTGGAAATTTTTCAATTGCTGGACTGAATTTTAACCGTGTCAAGCCAATGAATCCGGACCAGTCTTTCCTTTCTGGGCAGCAGGTGAAGGACATTGATACAGGGTTCCTGAGGCCTAAACAGGAACAGAAGGATGATACTATGTACGGCTCGTGCATGCCCCCGCTAGATCATGCAAATGCTTCACTCACTTCTTCACCATCACCATCCATTTATCAACGCGTCATGCACAATTTCCCTTCATAA

Predicted protein sequences of Glyma18g47741

Limit To All Plant Sequences

>Glyma18g47741.1   sequence type=predicted peptide   gene model=Glyma18g47741   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQDNLNNNCDEENFVSDSRGRKRSIAERRGFNSNAARINTALFRTATTSTTTPSPSPAVRSPRLTIPPGISPTALLDSPIMLPNSQAISPTVGSFFTLPLLSHEGSMLTTEQGNVDVSTAFDVAASFKFKPRGHLDPNPLPPFPASLNQVSSHFHSVKGENRESHLLAQVQPPLDFSCQADFSKGHSVKNSEVNSYNDMKMVNDAIVNANNVEMPMSGSEEVSDESAMLKNAINGEDFGGQPASEGEQKEVSHATGAVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSHDGQITEIIYKGAHNHAQPHPGHRASSLSTDEVSDMAEDSTLAKIEGGYVWRNIQTGLKDTKQSFDWKADGQERTSSTSAVTELSDPISTNKAKSLRIFELEDTPELSSTLASHDDDEDGTAHALVSAEDEAENDELEPKIRKKESYAVEPNLPPTRAVREPRVVVQIESDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCMVRKHVERASHNLKYVLTTYEGKHNHEVPTARTNNQVNSSDGGLPPNGANGQVSLTLPGNAGIPKPETHQTLGHHFDRKPEFSDEFLRPSLVGSFGNDMKFRPSSLCQMKYPSLNNAMPYGSYGLNPERCTAPQAGSIPSMFPDFPMPLPLNLPSSGNFSIAGLNFNRVKPMNPDQSFLSGQQVKDIDTGFLRPKQEQKDDTMYGSCMPPLDHANASLTSSPSPSIYQRVMHNFPS*

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