Glyma18g47685 - SoyBase

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Report for Sequence Feature Glyma18g47685

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57279210
stop:	57282845
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47685

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23330	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:8347200-8349347 FORWARD LENGTH=715	SoyBase	E_val: 5.00E-168	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_I1L6A9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6A9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HW11	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=Q2HW11_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47685

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g47685 not represented in the dataset	Glyma18g47685 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47685

Paralog	Evidence	Comments
Glyma09g38630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47685 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g241500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47685

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g47685

Limit To All Plant Sequences

>Glyma18g47685.2   sequence type=transcript   gene model=Glyma18g47685   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTGAACCACGATATAGTAGCCTCAATTGGAGGGTGCCCCAAGTCAACCATTTCCTCCACGAACTATATTCCAGCCTTGACTTGTTGCGCCCTATAAAAGCCAAATATTGAAGTATAAAACTCTTGACAGTAGACACTGCGTGTGTATTTGGTAATCCGTTAAAAAAAAAAAAAAAGAATCGCTCGCGGTTAGAATGTGAAAAGTTGAATAATTCAACCGTACCAAAATTGTCATCAAGGAGCAAACTCTATTAGGACCCACTTTAAACCGAATATGAAGCTAAAAGTTGTTGTTTCAATGAATGAGCTTTAGTAAGGGCCTTACGTTGGGGGCCAACACTATATGGGTCTTGGGTCATCATGTTCTCGGATATACGCCAACCATGTCTTCCTAGTTTCCGCGACCAATTATCGCAGTTCTACTACCACCCCATTTCACCTTCGTTGGCTCCAATCATGCTCCTTATATCACTTCACCTTATCCAATAGCCCACCACCACTGGGTACCCTTCATGCCCTCTACGTCAAGAATGGCTCTCTTCAAACTTTGAACCCGGCTAACCATCTTTTGACTCTGTATGCCAAATCCAACAACATGGCCCATGCCCAGAAGCTGTTTGATGAAATTCCCCAGAGAAACACTCAGACATGGACCATCCTTATATCGGGTTTTGCCCGAGCGGGCTCTTCAGAAATGGTCTTTAACCTTTTCAGAGAAATGCAGGCAAAGGGTGCTTGTCCAAATCAATATACCTTGTCCAGTGTCTTAAAGTGTTGTTCACTTGACAACAATCTTCAATTGGGCAAGGGAGTCCACGCGTGGATGCTCAGAAATGGGATTGATGTAGATGTTGTGCTGGGGAACTCTATTCTTGATCTTTACTTGAAATGCAAGGTTTTTGAGTACGCAGAAAGGTTGTTTGAGTTGATGAATGAGGGGGATGTTGTGTCGTGGAATATCATGATCGGTGCGTATCTGCGTGCAGGAGATGTGGAGAAGTCTCTTGACATGTTCAGGAGATTGCCTTACAAAGATGTCGTAAGTTGGAATACGATCGTAGATGGATTGCTGCAATGTGGTTATGAAAGACATGCATTAGAACAACTCTATTGTATGGTGGAATGTGGGACTGAGTTCTCTGCAGTCACTTTCTCCATAGCTCTTATCTTGGCTTCCTCTTTATCACATGTGGAGCTTGGGAGACAACTTCATGGGATGGTCTTAAAATTTGGCTTTGATAGTGATGGCTTTATAAGGAGTTCACTTGTAGAAATGTATTGTAAGTGTGGGAGAATGGATAAGGCGTCTATAATTCTCAGAGATGTTCCTCTGGATGTCCTGAGAAAAGGGAATGCTCGAGTTTCTTATAAGGAACCAAAGGCAGGAATTGTTTCATGGGGTTCAATGGTTTCTGGCTATGTTTGGAATGGGAAGTATGAAGATGGTTTGAAAACTTTCAGGTTAATGGTTCGTGAACTGGTTGTAGTGGATATTCGAACTGTTACAACCATTATTTCTGCTTGTGCTAATGCTGGAATTTTGGAATTTGGAAGGCATGTTCATGCTTACGTTCAGAAAATTGGGCATAGAATAGATGCTTATGTTGGTTCTTCCTTAATTGATATGTATTCTAAATCTGGTAGCCTGGATGATGCATGGATGGTTTTCAGACAAAGCAATGAACCCAACATTGTCATGTGGACTTCAATGATATCTGGCTATGCGCTACATGGTCAAGGAATGCATGCGATTGGTCTTTTTGAAGAAATGTTGAATCAGGGTATTATACCAAATGAGGTTACTTTTCTAGGGGTTTTAAATGCATGCAGCCATGCAGGGCTGATTGAAGAAGGCTGTAGATATTTTAGGATGATGAAAGATGCTTATTGCATCAACCCCGGAGTTGAACACTGTACTTCTATGGTTGATCTTTATGGTCGAGCGGGTCACTTAACTAAGACAAAAAACTTCATTTTCAAAAATGGTATCTCTCACTTGACTTCTGTGTGGAAATCATTTTTATCATCTTGTCGACTTCATAAAAATGTTGAAATGGGAAAGTGGGTTTCTGAAATGCTACTTCAAGTTGCACCATCTGATCCAGGAGCATACGTTTTGCTATCAAATATGTGTGCTTCTAACCATAGATGGGATGAGGCTGCCAGGGTAAGGAGTTTAATGCATCAAAGAGGGGTGAAGAAGCAGCCTGGGCAATCTTGGATTCAACTAAAGGATCAAATCCATACTTTCGTCATGGGAGATAGGTCTCATCCTCAAGACGATGAGATATATTCATATCTGGACATTTTAATTGGAAGGTTAAAGGAAATTGGATATTCCTTTGATGTGAAACTTGTCATGCAGGATGTAGAAGAAGAACAAGGGGAAGTACTTATTAGTCATCACAGTGAAAAACTTGCAGTTGTCTTTGGCATCATTAACACTGCCAATAGGACCCCAATTCGAATTATAAAGAACCTCCGCATTTGTACAGATTGCCATAACTTCATTAAGTATGCTTCTCAGCTTCTAGATCGTGAAATAATTGTAAGAGATATTCATAGGTTCCATCATTTTAAGCATGGTAGTTGCTCTTGTGGAGATTATTGGTGACAAAGGTAAAATATACAATTACTGAGTCTACAATATAGTCTTGAAGTCCTGAAATCACTCATCAGAACATAGTTTCTACATGTGAAACTTGGTGCAGTGGAGTAAAAAGATAGCAGGGAATCTTCTAACTTGTTGGTTCCGGGATACATTAAATGTATGGTTCATATTTTCTACATTTTTTATTTTTATCATAAGATCCAATTTGTATAATGAATTTGTTATCAGATGTTAGACTGACCAATCATTTCAATCTTGATATCATCTATGATGTATCATCTTCTATATGCCAATACAAGGCATTGATGAAGTAGAGCATCAGATCAGACTAAAGTTGTATTCTGACACTCAATCAACTAAGTTTAGCTCAAAACATGGAATGGGT

Coding sequences of Glyma18g47685

Limit To All Plant Sequences

>Glyma18g47685.1   sequence type=CDS   gene model=Glyma18g47685   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCTTGGGTCATCATGTTCTCGGATATACGCCAACCATGTCTTCCTAGTTTCCGCGACCAATTATCGCAGTTCTACTACCACCCCATTTCACCTTCGTTGGCTCCAATCATGCTCCTTATATCACTTCACCTTATCCAATAGCCCACCACCACTGGGTACCCTTCATGCCCTCTACGTCAAGAATGGCTCTCTTCAAACTTTGAACCCGGCTAACCATCTTTTGACTCTGTATGCCAAATCCAACAACATGGCCCATGCCCAGAAGCTGTTTGATGAAATTCCCCAGAGAAACACTCAGACATGGACCATCCTTATATCGGGTTTTGCCCGAGCGGGCTCTTCAGAAATGGTCTTTAACCTTTTCAGAGAAATGCAGGCAAAGGGTGCTTGTCCAAATCAATATACCTTGTCCAGTGTCTTAAAGTGTTGTTCACTTGACAACAATCTTCAATTGGGCAAGGGAGTCCACGCGTGGATGCTCAGAAATGGGATTGATGTAGATGTTGTGCTGGGGAACTCTATTCTTGATCTTTACTTGAAATGCAAGGTTTTTGAGTACGCAGAAAGGTTGTTTGAGTTGATGAATGAGGGGGATGTTGTGTCGTGGAATATCATGATCGGTGCGTATCTGCGTGCAGGAGATGTGGAGAAGTCTCTTGACATGTTCAGGAGATTGCCTTACAAAGATGTCGTAAGTTGGAATACGATCGTAGATGGATTGCTGCAATGTGGTTATGAAAGACATGCATTAGAACAACTCTATTGTATGGTGGAATGTGGGACTGAGTTCTCTGCAGTCACTTTCTCCATAGCTCTTATCTTGGCTTCCTCTTTATCACATGTGGAGCTTGGGAGACAACTTCATGGGATGGTCTTAAAATTTGGCTTTGATAGTGATGGCTTTATAAGGAGTTCACTTGTAGAAATGTATTGTAAGTGTGGGAGAATGGATAAGGCGTCTATAATTCTCAGAGATGTTCCTCTGGATGTCCTGAGAAAAGGGAATGCTCGAGTTTCTTATAAGGAACCAAAGGCAGGAATTGTTTCATGGGGTTCAATGGTTTCTGGCTATGTTTGGAATGGGAAGTATGAAGATGGTTTGAAAACTTTCAGGTTAATGGTTCGTGAACTGGTTGTAGTGGATATTCGAACTGTTACAACCATTATTTCTGCTTGTGCTAATGCTGGAATTTTGGAATTTGGAAGGCATGTTCATGCTTACGTTCAGAAAATTGGGCATAGAATAGATGCTTATGTTGGTTCTTCCTTAATTGATATGTATTCTAAATCTGGTAGCCTGGATGATGCATGGATGGTTTTCAGACAAAGCAATGAACCCAACATTGTCATGTGGACTTCAATGATATCTGGCTATGCGCTACATGGTCAAGGAATGCATGCGATTGGTCTTTTTGAAGAAATGTTGAATCAGGGTATTATACCAAATGAGGTTACTTTTCTAGGGGTTTTAAATGCATGCAGCCATGCAGGGCTGATTGAAGAAGGCTGTAGATATTTTAGGATGATGAAAGATGCTTATTGCATCAACCCCGGAGTTGAACACTGTACTTCTATGGTTGATCTTTATGGTCGAGCGGGTCACTTAACTAAGACAAAAAACTTCATTTTCAAAAATGGTATCTCTCACTTGACTTCTGTGTGGAAATCATTTTTATCATCTTGTCGACTTCATAAAAATGTTGAAATGGGAAAGTGGGTTTCTGAAATGCTACTTCAAGTTGCACCATCTGATCCAGGAGCATACGTTTTGCTATCAAATATGTGTGCTTCTAACCATAGATGGGATGAGGCTGCCAGGGTAAGGAGTTTAATGCATCAAAGAGGGGTGAAGAAGCAGCCTGGGCAATCTTGGATTCAACTAAAGGATCAAATCCATACTTTCGTCATGGGAGATAGGTCTCATCCTCAAGACGATGAGATATATTCATATCTGGACATTTTAATTGGAAGGTTAAAGGAAATTGGATATTCCTTTGATGTGAAACTTGTCATGCAGGATGTAGAAGAAGAACAAGGGGAAGTACTTATTAGTCATCACAGTGAAAAACTTGCAGTTGTCTTTGGCATCATTAACACTGCCAATAGGACCCCAATTCGAATTATAAAGAACCTCCGCATTTGTACAGATTGCCATAACTTCATTAAGTATGCTTCTCAGCTTCTAGATCGTGAAATAATTGTAAGAGATATTCATAGGTTCCATCATTTTAAGCATGGTAGTTGCTCTTGTGGAGATTATTGGTGA

>Glyma18g47685.2   sequence type=CDS   gene model=Glyma18g47685   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCTTGGGTCATCATGTTCTCGGATATACGCCAACCATGTCTTCCTAGTTTCCGCGACCAATTATCGCAGTTCTACTACCACCCCATTTCACCTTCGTTGGCTCCAATCATGCTCCTTATATCACTTCACCTTATCCAATAGCCCACCACCACTGGGTACCCTTCATGCCCTCTACGTCAAGAATGGCTCTCTTCAAACTTTGAACCCGGCTAACCATCTTTTGACTCTGTATGCCAAATCCAACAACATGGCCCATGCCCAGAAGCTGTTTGATGAAATTCCCCAGAGAAACACTCAGACATGGACCATCCTTATATCGGGTTTTGCCCGAGCGGGCTCTTCAGAAATGGTCTTTAACCTTTTCAGAGAAATGCAGGCAAAGGGTGCTTGTCCAAATCAATATACCTTGTCCAGTGTCTTAAAGTGTTGTTCACTTGACAACAATCTTCAATTGGGCAAGGGAGTCCACGCGTGGATGCTCAGAAATGGGATTGATGTAGATGTTGTGCTGGGGAACTCTATTCTTGATCTTTACTTGAAATGCAAGGTTTTTGAGTACGCAGAAAGGTTGTTTGAGTTGATGAATGAGGGGGATGTTGTGTCGTGGAATATCATGATCGGTGCGTATCTGCGTGCAGGAGATGTGGAGAAGTCTCTTGACATGTTCAGGAGATTGCCTTACAAAGATGTCGTAAGTTGGAATACGATCGTAGATGGATTGCTGCAATGTGGTTATGAAAGACATGCATTAGAACAACTCTATTGTATGGTGGAATGTGGGACTGAGTTCTCTGCAGTCACTTTCTCCATAGCTCTTATCTTGGCTTCCTCTTTATCACATGTGGAGCTTGGGAGACAACTTCATGGGATGGTCTTAAAATTTGGCTTTGATAGTGATGGCTTTATAAGGAGTTCACTTGTAGAAATGTATTGTAAGTGTGGGAGAATGGATAAGGCGTCTATAATTCTCAGAGATGTTCCTCTGGATGTCCTGAGAAAAGGGAATGCTCGAGTTTCTTATAAGGAACCAAAGGCAGGAATTGTTTCATGGGGTTCAATGGTTTCTGGCTATGTTTGGAATGGGAAGTATGAAGATGGTTTGAAAACTTTCAGGTTAATGGTTCGTGAACTGGTTGTAGTGGATATTCGAACTGTTACAACCATTATTTCTGCTTGTGCTAATGCTGGAATTTTGGAATTTGGAAGGCATGTTCATGCTTACGTTCAGAAAATTGGGCATAGAATAGATGCTTATGTTGGTTCTTCCTTAATTGATATGTATTCTAAATCTGGTAGCCTGGATGATGCATGGATGGTTTTCAGACAAAGCAATGAACCCAACATTGTCATGTGGACTTCAATGATATCTGGCTATGCGCTACATGGTCAAGGAATGCATGCGATTGGTCTTTTTGAAGAAATGTTGAATCAGGGTATTATACCAAATGAGGTTACTTTTCTAGGGGTTTTAAATGCATGCAGCCATGCAGGGCTGATTGAAGAAGGCTGTAGATATTTTAGGATGATGAAAGATGCTTATTGCATCAACCCCGGAGTTGAACACTGTACTTCTATGGTTGATCTTTATGGTCGAGCGGGTCACTTAACTAAGACAAAAAACTTCATTTTCAAAAATGGTATCTCTCACTTGACTTCTGTGTGGAAATCATTTTTATCATCTTGTCGACTTCATAAAAATGTTGAAATGGGAAAGTGGGTTTCTGAAATGCTACTTCAAGTTGCACCATCTGATCCAGGAGCATACGTTTTGCTATCAAATATGTGTGCTTCTAACCATAGATGGGATGAGGCTGCCAGGGTAAGGAGTTTAATGCATCAAAGAGGGGTGAAGAAGCAGCCTGGGCAATCTTGGATTCAACTAAAGGATCAAATCCATACTTTCGTCATGGGAGATAGGTCTCATCCTCAAGACGATGAGATATATTCATATCTGGACATTTTAATTGGAAGGTTAAAGGAAATTGGATATTCCTTTGATGTGAAACTTGTCATGCAGGATGTAGAAGAAGAACAAGGGGAAGTACTTATTAGTCATCACAGTGAAAAACTTGCAGTTGTCTTTGGCATCATTAACACTGCCAATAGGACCCCAATTCGAATTATAAAGAACCTCCGCATTTGTACAGATTGCCATAACTTCATTAAGTATGCTTCTCAGCTTCTAGATCGTGAAATAATTGTAAGAGATATTCATAGGTTCCATCATTTTAAGCATGGTAGTTGCTCTTGTGGAGATTATTGGTGA

Predicted protein sequences of Glyma18g47685

Limit To All Plant Sequences

>Glyma18g47685.1   sequence type=predicted peptide   gene model=Glyma18g47685   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLGSSCSRIYANHVFLVSATNYRSSTTTPFHLRWLQSCSLYHFTLSNSPPPLGTLHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDYW*

>Glyma18g47685.2   sequence type=predicted peptide   gene model=Glyma18g47685   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLGSSCSRIYANHVFLVSATNYRSSTTTPFHLRWLQSCSLYHFTLSNSPPPLGTLHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDYW*

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