Glyma18g47600 - SoyBase

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Report for Sequence Feature Glyma18g47600

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57203677
stop:	57209596
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65410	AT	Annotation by Michelle Graham. TAIR10: non-intrinsic ABC protein 11 \| chr1:24295362-24297332 FORWARD LENGTH=345	SoyBase	E_val: 0	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
PTHR24220	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24220:SF52	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00005	PFAM	ABC transporter	JGI		ISS
UniRef100_C6TD59	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TD59_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7KQL9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter n=1 Tax=Medicago truncatula RepID=G7KQL9_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47600

Paralog	Evidence	Comments
Glyma09g38730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g240700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47600

Limit To All Plant Sequences

>Glyma18g47600.1   sequence type=CDS   gene model=Glyma18g47600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCCCTTTCCACCACCCCTTTTCTTCCCTTCACTGCAAAAAATGCTTCTACTAGAATCCCTCCTCCCACATCATTCTCTTACAGCAAGCAACGTAGTAACAGGGATCCCAGGAAGGTTGTCTGCGCCTGCATCGCTCCTCCTCAAAACTTCAAGAGCCAGGACTCTTCCGCCATTCATTTCAATGGTTCGTCCAAATCAGAGCAATTGAGCACTGCGCGGGATCATGAGGATGATTCTGATGTTCTTATTGAGTGTAGAGACGTGTACAAGTCTTTTGGGGAAAAGAAAATCTTAAATGGTGTCAGCTTCAAGATCAAGCATGGTGAAGCTGTTGGAATAATTGGTCCCTCTGGGACTGGCAAATCTACAGTTTTGAAGATTATTGCAGGACTTCTTGCTCCGGACAAGGGGGAAGTTTATATTCGAGGTAAAAAGAGAGTTGGTTTAGTAAGCGATGATGACATATCTGGTCTTCGGATTGGATTGGTTTTCCAAAGTGCTGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCAAGCATGTCTGAGGATCAGATATCAGAGCTTGTCACGGAAACCTTGGCTGCAGTTGGATTGAAGGGAGTTGAGGATCGGTTGCCTTCTGAGTTATCAGGTGGGATGAAAAAGCGAGTTGCTTTAGCTCGATCTATTATTTGTGACACTACAAAGGAATCAATAGAGCCAGAGGTGCTCTTGTATGACGAACCAACTGCTGGACTTGATCCCATTGCATCTACTGTTGTTGAAGATCTGATTCGCTCTGTGCACATAAAAGGACAAGATGCACGTGGAAAACCTGGGAATATTTCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGATTGTTGTTTCTACACAAGGGAAAGATTGTTTGGGAAGGAATGACTCATGAATTTACAACTTCAACTAATCCAATTGTCCAGCAGTTTGCATCTGGGAGCCTTGATGGTCCTATCAGATATTAG

Predicted protein sequences of Glyma18g47600

Limit To All Plant Sequences

>Glyma18g47600.1   sequence type=predicted peptide   gene model=Glyma18g47600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSLSTTPFLPFTAKNASTRIPPPTSFSYSKQRSNRDPRKVVCACIAPPQNFKSQDSSAIHFNGSSKSEQLSTARDHEDDSDVLIECRDVYKSFGEKKILNGVSFKIKHGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGKKRVGLVSDDDISGLRIGLVFQSAALFDSLTVRENVGFLLYEHSSMSEDQISELVTETLAAVGLKGVEDRLPSELSGGMKKRVALARSIICDTTKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGQDARGKPGNISSYVVVTHQHSTIKRAIDRLLFLHKGKIVWEGMTHEFTTSTNPIVQQFASGSLDGPIRY*

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