Glyma18g47590 - SoyBase

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Report for Sequence Feature Glyma18g47590

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57191625
stop:	57202864
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40730	AT	Annotation by Michelle Graham. TAIR10: Protein kinase family protein with ARM repeat domain \| chr2:16990083-16996072 REVERSE LENGTH=798	SoyBase	E_val: 0	ISS
GO:0000910	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis	SoyBase	N/A	ISS
GO:0006409	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA export from nucleus	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007017	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based process	SoyBase	N/A	ISS
GO:0000049	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tRNA binding	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1243	KOG	Protein kinase	JGI		ISS
PTHR12984	Panther	SCY1-RELATED S/T PROTEIN KINASE-LIKE	JGI		ISS
PTHR12984:SF3	Panther	PACE-1-RELATED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_B9S4F4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9S4F4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E584	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E584 related cluster n=1 Tax=unknown RepID=UPI000233E584	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47590

Paralog	Evidence	Comments
Glyma09g38740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g240600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47590

Limit To All Plant Sequences

>Glyma18g47590.1   sequence type=CDS   gene model=Glyma18g47590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAAATTCCTGAAAGAGGTCGTTGGCGGATCTGGCACCGGCGTCAAGGATCTCCCTTACACCATCGCTGAATCTTACCCTTCTGCTTGGGGCTCTTGGACTCATTCTCGCGGCACCTCCAAGGATGACGGTTCTCCTGTCTCGGTGTTCTCACTCTCCGGCTCCAATGCTCAGGATGGTCACTTAGCTGCTGCACGCAATGGTGTCAAGCGTCTTCGAACTGTCAGGCATCCGAATATCTTGTCGTTTCTTCACAGCACTGAGATTGAGACGTATGATGCAGGTTCTCCTAAGGTTACAATATATATTGTGACCGAGCCTGTGATGCCACTATCTGAGAAGATCAAGGAGTTAGGGCTTGAAGGTACACAAAGGGATGAATATTATGCTTTGGGTCTTCATCAAATAGCTAAAGCTGTGAGCTTCTTGAATAATGATTGTAAACTTGTTCATGGCAACGTTTGCATGGCTAGTGTCGTTGTGACACCAACTTTGGACTGGAAGCTTCATGCTTTTGATGTTCTATCAGAGTTTGATGGGAGCAGTGAAATGTCTTCTGGCCAAATGCTGCAATATGCATGGCTTGTTGGATCACAATACAAACCAATGGAGTTGGCAAAATCAGACTGGGATGCAATTAAGAAGTCTCCTCCATGGGCCATAGATTCTTGGGGCATGGGTTGCCTAATCTATGAGGTATTCTCTGGATTGAGGTTGGGCAAAACAGAGGAGTTACGCAACATTGGTTCCATTCCGAAGTCTCTGCTTCCAGATTACCAACGACTATTGAGTTCCATGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGCGAATATTTTCAAAATAAGTTGGTAGACACGATACATTTCATGGAAATTCTCAGTTTGAAAGATAGTGTAGAGAGAGACACCTTCTTCCGCAAGCTTCCAAATTTAGCTGAGCAACTTCCTCGCCAGATAGTGTTGAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCCTCAGCTTTGACTGCATTGTTGAAAATGGGTTCCTGGCTTTCAGCTGAGGAGTTTAATGTCAAGGTACTTCCAACAATTGTAAAACTCTTTGCCTCCAATGATCGAGCTATACGAGTTGCCCTTCTTCAACATATTGATCAATATGGAGAGTCTTTATCAGCGCAAGCTGTTGATGAACAAGTTTACCCTCATGTTGCTACTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCAAAGTTGTCTCAAAGGACAATGTCAGGGTCATTATTGAAGTATCTGTCAAAGTTGCAGGTTGATGAAGAGCCAGCAATTAGAACAAATACTACCATATTATTAGGCAATATTGGAAGTTACTTAAACGAAGGAACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGGCATTATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAGTGATGTTAGAACTAAGGCATTTCAAGCTGTTGATCAGTTTTTGCAGATAGCAAAGCAACATTATGAAAAGACAAATGCAGCAGATACCACTGGTGTTGCAGGTGTGGGAAGCTCATCTGTTCCCGGAAATGCTAGTTTGCTTGGGTGGGCTATGAGTTCTTTGACCTTGAAGGGTAAACCTTCTGATCATGCTCCAGTTGCTTCTGCAAGTTCAACTGCAATTACTTCAACATCTTCTAATGGCACCGCAGGTATAGAGACGCCATCAACAGCACCAGCCCGTGTAAACTCTACCTCAGATTTGGCTGAACACCCTGTGCCTACGTCTCCTACATCAACGGATGGCTGGGGGGAACTTGAGAATGGAATTGATGAGGAGCATGGAAGTGACAGGGATGGGTGGGATGATCTGGAACCACTTGAAGAGTCAAAGCCAGCTCTTGCAAACATTCAAGCAGCTCAAAGGCGGCCTGTTTCTCAACCTATTTCACATACAAAACAAGCCTCGAATTTGCTATCAAAAAGTACACCAAAATTGAACAAGGATGAGGATGATGATTTGTGGGGATCTATAGCTGCTCCTGCTCCAAAAACTGCAAGACCTTTAAATTTGAAATCAGCTCAAACTGATGATGATGATCCTTGGGCTGCCATTGCTGCTCCAGCACCCACGACCAAGGCCAAACCCTTATCGACTGGCAGAGGTAGGGGAGCCAAACCTGCTGCTCCAAAATTAGGTGCTCAGCGGATAAACCGGACATCATAA

Predicted protein sequences of Glyma18g47590

Limit To All Plant Sequences

>Glyma18g47590.1   sequence type=predicted peptide   gene model=Glyma18g47590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFKFLKEVVGGSGTGVKDLPYTIAESYPSAWGSWTHSRGTSKDDGSPVSVFSLSGSNAQDGHLAAARNGVKRLRTVRHPNILSFLHSTEIETYDAGSPKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYALGLHQIAKAVSFLNNDCKLVHGNVCMASVVVTPTLDWKLHAFDVLSEFDGSSEMSSGQMLQYAWLVGSQYKPMELAKSDWDAIKKSPPWAIDSWGMGCLIYEVFSGLRLGKTEELRNIGSIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVERDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAASALTALLKMGSWLSAEEFNVKVLPTIVKLFASNDRAIRVALLQHIDQYGESLSAQAVDEQVYPHVATGFSDTSAFLRELTLKSMLILAPKLSQRTMSGSLLKYLSKLQVDEEPAIRTNTTILLGNIGSYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEVATRILPNVVVLTIDPDSDVRTKAFQAVDQFLQIAKQHYEKTNAADTTGVAGVGSSSVPGNASLLGWAMSSLTLKGKPSDHAPVASASSTAITSTSSNGTAGIETPSTAPARVNSTSDLAEHPVPTSPTSTDGWGELENGIDEEHGSDRDGWDDLEPLEESKPALANIQAAQRRPVSQPISHTKQASNLLSKSTPKLNKDEDDDLWGSIAAPAPKTARPLNLKSAQTDDDDPWAAIAAPAPTTKAKPLSTGRGRGAKPAAPKLGAQRINRTS*

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