Glyma18g47570 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g47570

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57183652
stop:	57186565
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54900	AT	Annotation by Michelle Graham. TAIR10: CAX interacting protein 1 \| chr3:20341850-20342371 REVERSE LENGTH=173	SoyBase	E_val: 6.00E-64	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0048653	GO-bp	Annotation by Michelle Graham. GO Biological Process: anther development	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0015035	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity	SoyBase	N/A	ISS
GO:0015038	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione disulfide oxidoreductase activity	SoyBase	N/A	ISS
GO:0015297	GO-mf	Annotation by Michelle Graham. GO Molecular Function: antiporter activity	SoyBase	N/A	ISS
KOG1752	KOG	Glutaredoxin and related proteins	JGI		ISS
PTHR10293	Panther	GLUTAREDOXIN	JGI		ISS
PF00462	PFAM	Glutaredoxin	JGI		ISS
UniRef100_C6SZX3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SZX3_SOYBN	SoyBase	E_val: 1.00E-127	ISS
UniRef100_G7KQL7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutaredoxin-like protein n=1 Tax=Medicago truncatula RepID=G7KQL7_MEDTR	SoyBase	E_val: 5.00E-72	ISS

Expression Patterns of Glyma18g47570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47570

Paralog	Evidence	Comments
Glyma09g38760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g240400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g47570

Limit To All Plant Sequences

>Glyma18g47570.2   sequence type=transcript   gene model=Glyma18g47570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAAAAGAGATTTATGATTGAAACAAAGTATAAAATTAAGTTCATTACCCTTTTTGTCGTAAACTTATTATAATTATTTATTGAGACGGTATGTTATTGAGACAAAAAGGGATCAGTGGAAGTGAAGGAGTTTAAGATATCTGGAGCAAAGTGTGTTGTTCTCTGTTTCGAAGCAGCGGAAACAAACATGTCGTGGTGTTACTGCGCTAAGCCTATGACTTTGCAGTTGCCGTTGCAATCAAGAGCAGCATCATCGTTCCATTCCCACGTTGGAGGAGTAACAGTAACATTCTCAACACTGTCTCTTCGACCCTCTTCTCCTCTTGTTCTGACCCACAACCTCCACTTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGCGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAAAGTAGTTGTGTTTATGAAGGGAACTAAAGACTTTCCACAGTGTGGATTCTCAAACACAGTGGTGCAAATATTGAAGTCTCTAAATGTGCCTTTTGAAACCATAAATGTGCTTGAAAATGACTTGTTGCGCCAAGGGCTGAAAGAGTACTCCAGTTGGCCTACCTTTCCTCAAGTCTACATAGAAGGAGAGTTTTTTGGTGGCTGTGATATCACTGTTGATGCATATCAGAAGGGGGAATTGCAGGAGCTGTTGGAGAAGGCAATGTTGTCCTGAAGCTATGGAAGGAATGAGAGGACTTCCCAAGTTTGTACTTTGTAATCTTCCCCCTAAAGTTATACTGTGGCTCAGTGACAATGGACCAAATAAATTGTATGATGCATTTTGTGTCCACAATTGCCTATTATGATTACTGCAATACAAATATCCCGGTATTTGAGTACAAAACAGATAAGTCACAATTATACCCTTTATGAGTGCGCAATGTTAGTTGAGCATTCTCTAACAAAATTTATGCGCTAATTTGGAAATAAAAGTCATATTTACCACCAAGCATGGGAATCAAC

Coding sequences of Glyma18g47570

Limit To All Plant Sequences

>Glyma18g47570.1   sequence type=CDS   gene model=Glyma18g47570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTGGTGTTACTGCGCTAAGCCTATGACTTTGCAGTTGCCGTTGCAATCAAGAGCAGCATCATCGTTCCATTCCCACGTTGGAGGAGTAACAGTAACATTCTCAACACTGTCTCTTCGACCCTCTTCTCCTCTTGTTCTGACCCACAACCTCCACTTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGCGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAAAGTAGTTGTGTTTATGAAGGGAACTAAAGACTTTCCACAGTGTGGATTCTCAAACACAGTGGTGCAAATATTGAAGTCTCTAAATGTGCCTTTTGAAACCATAAATGTGCTTGAAAATGACTTGTTGCGCCAAGGGCTGAAAGAGTACTCCAGTTGGCCTACCTTTCCTCAAGTCTACATAGAAGGAGAGTTTTTTGGTGGCTGTGATATCACTGTTGGTACCCCATCTTTCATCTGTTTACATTGCTGTTATAATTGA

>Glyma18g47570.2   sequence type=CDS   gene model=Glyma18g47570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTGGTGTTACTGCGCTAAGCCTATGACTTTGCAGTTGCCGTTGCAATCAAGAGCAGCATCATCGTTCCATTCCCACGTTGGAGGAGTAACAGTAACATTCTCAACACTGTCTCTTCGACCCTCTTCTCCTCTTGTTCTGACCCACAACCTCCACTTCCAACCCAAACTCAAACGCGCTTCCACAACCATTCGCTGCTCCTCTGCGTTGACTCCTCAATTGAAGTCTACCTTGGATCAAGTTATTGCTTCAAATAAAGTAGTTGTGTTTATGAAGGGAACTAAAGACTTTCCACAGTGTGGATTCTCAAACACAGTGGTGCAAATATTGAAGTCTCTAAATGTGCCTTTTGAAACCATAAATGTGCTTGAAAATGACTTGTTGCGCCAAGGGCTGAAAGAGTACTCCAGTTGGCCTACCTTTCCTCAAGTCTACATAGAAGGAGAGTTTTTTGGTGGCTGTGATATCACTGTTGATGCATATCAGAAGGGGGAATTGCAGGAGCTGTTGGAGAAGGCAATGTTGTCCTGA

Predicted protein sequences of Glyma18g47570

Limit To All Plant Sequences

>Glyma18g47570.1   sequence type=predicted peptide   gene model=Glyma18g47570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWCYCAKPMTLQLPLQSRAASSFHSHVGGVTVTFSTLSLRPSSPLVLTHNLHFQPKLKRASTTIRCSSALTPQLKSTLDQVIASNKVVVFMKGTKDFPQCGFSNTVVQILKSLNVPFETINVLENDLLRQGLKEYSSWPTFPQVYIEGEFFGGCDITVGTPSFICLHCCYN*

>Glyma18g47570.2   sequence type=predicted peptide   gene model=Glyma18g47570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWCYCAKPMTLQLPLQSRAASSFHSHVGGVTVTFSTLSLRPSSPLVLTHNLHFQPKLKRASTTIRCSSALTPQLKSTLDQVIASNKVVVFMKGTKDFPQCGFSNTVVQILKSLNVPFETINVLENDLLRQGLKEYSSWPTFPQVYIEGEFFGGCDITVDAYQKGELQELLEKAMLS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain