Glyma18g47545 - SoyBase

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Report for Sequence Feature Glyma18g47545

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57163423
stop:	57171865
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47545

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65080	AT	Annotation by Michelle Graham. TAIR10: Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain \| chr1:24176619-24180729 FORWARD LENGTH=525	SoyBase	E_val: 4.00E-140	ISS
GO:0051205	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein insertion into membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
KOG1239	KOG	Inner membrane protein translocase involved in respiratory chain assembly	JGI		ISS
PTHR12428	Panther	CYTOCHROME OXIDASE BIOGENESIS PROTEIN	JGI		ISS
PTHR12428:SF3	Panther	CYTOCHROME OXIDASE BIOGENESIS PROTEIN (OXA1 MITOCHONDRIAL)	JGI		ISS
PF02096	PFAM	60Kd inner membrane protein	JGI		ISS
UniRef100_G7KQL5	UniRef	Annotation by Michelle Graham. Best UniRef hit: ALBINO3-like protein n=2 Tax=Medicago truncatula RepID=G7KQL5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_G7KQL5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ALBINO3-like protein n=2 Tax=Medicago truncatula RepID=G7KQL5_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47545

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g47545 not represented in the dataset	Glyma18g47545 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47545

Paralog	Evidence	Comments
Glyma09g38791	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47545 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g240200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47545

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47545

Limit To All Plant Sequences

>Glyma18g47545.1   sequence type=CDS   gene model=Glyma18g47545   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACTGCGGCGGCGCTCTTTTCTCGCCTCCGCCGCGCGCGGCCGTCCTCCTCCCTCTCCCTCCTCTCTCCTCCACGTGTCCTCTCCTCTCCTCTCCCTCCTCCGCTTCCCGCTCCCGCATCACCTCACTCTCCAACCCTCGCCTTTCTCGACGCGTTCCGCTCACGCGCTTTCTCCTCTCACATTTCCGACAATCGAGAACCGGAGCTGAACTCGTTCGGTGTCGACTCACCGCTTAACTCGGAGCTTCTGAAAGTGATTGCTGATACTAGTGGCGGCGGCGAAGACGACGCCGTTTTTCCCGTTCGCGCCGCGATTTCGATGCTCGAGTCGTTTCACGATCTTTCTGGATTTCCGTGGTGGTTAACTATAATTTCATCTACTTTGGCTCTCAGAATTGTTGTTCTTTGTCCTCTGATTTTATCACTTCACAAGCTTAAAACCATTGGAGAGTTTTTTCCTAAATTGCCTCCTCCATTCCCACCGCCTTTCTCAGGAAAGAGTTATATTCGTCAGTTTCTATTCTTCCAGAAGAAGAGAAAAGCAATTGGATGTCCCTCTTATGTGTGGCCGCTGGTACCATTCATTGTACAGGTTCCGTGCTTTTTCTTGTGGATGATTAGCATAAGGAAGATGTCACTGGATGGTCACCCTGGTTTTGATTGTGGCGGTGCTTTATGGTTCCAGAATTTAACAGAACTCTCTCATGGTTATTCAGGGTTCATCTTCCCTTTTCTGATTGCTGGTTTGCACTACGTCACTGTTCAGATATCCTTTAGGAAACCTTTGGTTGCAGAAACACGGGATATTTTTGACTTATTAGCCAAATTTTATAAGCAATACTTGGACTTTCTAACGATACCTATAGCTATCACGGGTTTTTGCATTCCTCAGGGCAGCCAGCTCTATTGGGTTACCAATAGTTCATTAACCCTCATTCAGCAAATAACCCTTAGACATCCTGCTGTCCTTGCAAAGTTGGGGTTACTAGACAATAGTCAAAAGGGAGCTTCTGAGCAAATTGCTGCTTCTAAAACAGCTCCTTCACCAGGGTTACAAGATAATATTCCAACAGCAGCTACCAAGGAAACTGTTTCGCCTGAAAAAAATCCTCTGGATTCACCTGAAAAGTGGCATAGAATACCTATAGAGGAGATGTCCCCTAAAGAACTGGTTACTCTTGCAGTCCCATTTTTAAACAGTGATGATAAAGAAAGTGCAATTCCTTTACTAAAACTAGCCCTTGATAAGGACCCTGACTATGTACGAGCTTTAGTTTTGATGGGACGGGTTCTATTGCTGAAACATGTAAATGATGAAGCTAATGAGTACTTTGAGCGTGCAATATCAAAACTTTCTCTTGCTGGACATTCAGCTGATGCGGAAGAAGTTGATCTTTTGATTCTTTCATCCCAGTGGGCTGGAATTGCCTGCGAACGGCAGGGAAAGAGGGCCGAAGGACGGGCACACTTTGAAAGAGTAGCAAATATGCAGGAGCCAGAAGATCCTACTAGCAAAGGCTATTATTTTGATGGGTTACTGTTGCTTGCCAGCACTCTATTTGATGCAGGTCAAAAGGCCGAAGCTGCGAAGTACCTACGTCTTGTTGTTGCTTATAAACCTGGTTATAAAAAATTCTTGGAACAGTGTGAAAAAGATGATGATTTTACAAGTGATCTTGCCCGTAGTAGGAGAGACCTCTAA

Predicted protein sequences of Glyma18g47545

Limit To All Plant Sequences

>Glyma18g47545.1   sequence type=predicted peptide   gene model=Glyma18g47545   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATAAALFSRLRRARPSSSLSLLSPPRVLSSPLPPPLPAPASPHSPTLAFLDAFRSRAFSSHISDNREPELNSFGVDSPLNSELLKVIADTSGGGEDDAVFPVRAAISMLESFHDLSGFPWWLTIISSTLALRIVVLCPLILSLHKLKTIGEFFPKLPPPFPPPFSGKSYIRQFLFFQKKRKAIGCPSYVWPLVPFIVQVPCFFLWMISIRKMSLDGHPGFDCGGALWFQNLTELSHGYSGFIFPFLIAGLHYVTVQISFRKPLVAETRDIFDLLAKFYKQYLDFLTIPIAITGFCIPQGSQLYWVTNSSLTLIQQITLRHPAVLAKLGLLDNSQKGASEQIAASKTAPSPGLQDNIPTAATKETVSPEKNPLDSPEKWHRIPIEEMSPKELVTLAVPFLNSDDKESAIPLLKLALDKDPDYVRALVLMGRVLLLKHVNDEANEYFERAISKLSLAGHSADAEEVDLLILSSQWAGIACERQGKRAEGRAHFERVANMQEPEDPTSKGYYFDGLLLLASTLFDAGQKAEAAKYLRLVVAYKPGYKKFLEQCEKDDDFTSDLARSRRDL*

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