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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G31800 | AT | Annotation by Michelle Graham. TAIR10: cytochrome P450, family 97, subfamily A, polypeptide 3 | chr1:11396440-11399470 FORWARD LENGTH=595 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0006636 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0016123 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xanthophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0043085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0010291 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carotene beta-ring hydroxylase activity | SoyBase | N/A | ISS |
| GO:0016705 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | SoyBase | N/A | ISS |
| GO:0019825 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxygen binding | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| KOG0157 | KOG | Cytochrome P450 CYP4/CYP19/CYP26 subfamilies | JGI | ISS | |
| PTHR24305 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00067 | PFAM | Cytochrome P450 | JGI | ISS | |
| UniRef100_I1N3W7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3W7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2HV82 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 n=1 Tax=Medicago truncatula RepID=Q2HV82_MEDTR | SoyBase | E_val: 0 | ISS |
|
Glyma18g47500 not represented in the dataset |
Glyma18g47500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g38820 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g239900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g47500.2 sequence type=transcript gene model=Glyma18g47500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTAATCAACTCAACAATCAGCAATGACTGCTGCTGTACAATTGCTTTTCTGTTCTCTCCCTTCTTTCATACATACCTGCATGTTATTCTTAGTACTTTATGTGCAGGGTATCTTGGCTGAGATCCTAGACTTTGTAATGGGGAAAGGGCTTATCCCAGCTGATGGTGAAATATGGCGAGTTAGACGTCGTGCTATAGTCCCAGCATTGCACCAGAAGTATGTAGCAGCTATGATTGGCCTTTTTGGACAAGCTGCAGATCGGCTCTGCCAGAAGCTAGATGCTGCTGCATCTGATGGAGAAGATGTTGAGATGGAATCACTTTTCTCTCGATTGACCTTGGACATCATTGGCAAGGCAGTATTCAATTATGATTTTGATAGTTTATCAAATGACACTGGTATAGTTGAGGCTGTTTATACTGTACTGAGAGAAGCAGAAGATCGAAGTGTTGCTCCAATTCCAGTCTGGGAGATCCCAATATGGAAAGACGTATCACCACGTCTAAGGAAGGTTAATGCAGCTCTCAAATTAATCAATGATACGCTTGATGATCTGATAGCAATATGCAAGAGAATGGTGGATGAAGAAGAGTTACAGTTTCATGAGGAGTACATGAATGAGCAAGATCCAAGTATTCTACACTTCTTGTTGGCGTCAGGAGATGATGTGTCAAGTAAGCAACTTCGTGATGACTTAATGACCATGCTCATTGCTGGACATGAAACATCAGCTGCTGTTTTAACTTGGACCTTTTATCTTCTATCCAAGGAGCCAAGAGTCATGTCCAAGCTCCAAGAAGAGGTTGACTCTGTACTTGGAGATCAATATCCAACTATAGAAGACATGAAGAAACTCAAATATACAACCCGAGTGATCAATGAGTCATTGAGGCTTTACCCACAACCACCTGTGTTAATTCGCCGCTCTCTTGAGGATGATGTTCTTGGAGAGTACCCTATAAAGAGAAATGAAGATATCTTTATATCTGTCTGGAACCTACATCGCAGTCCAAAACTGTGGGATGATGCTGATAAATTCGAACCTGAAAGATGGGCATTAGATGGACCAAGTCCTAATGAGACAAATCAAAACTTCAAATATCTTCCGTTTGGTGGCGGACCACGGAAATGTGTAGGTGATTTGTTTGCTTCCTACGAGACTGTGGTAGCACTCGCAATGCTTGTTAGACGATTCAACTTTCAAATAGCAGTTGGAGCTCCACCGGTTGAGATGACTACTGGAGCTACAATTCATACAACACAAGGGTTGAAGATGACTGTAACTCACAGAATAAAACCTCCTATTGTGCCCTCATTACAGATGTCAACTTTGGAAGTGGATCCATCCATAAGCCTTTCTGATCAAGATGAAGTAAGTCAGAAAGGCGAAGTTTACCAGGCTCAGGCTCAGTCCTAATTGCTGCTGTATAACAAATCATAAACCATACAATGAGTGCAAGGGGGGAAAAAGTAGTATTCTTTATATTCTTTTAGCTGCTTGAGTGAAATTTGTAGTATGGTGAGGCTTGATATCCCCAACAATCCCCCAAACCCAGCTCCTTTGCAAGGAAGAGGGCAAAACTTCAAATCCTTCACGCCTTTACAATTCTTATTAAAAAGGGTGGAATACACAAATTATAAATTTATAAATACAACCTAAAATAAATTTGACAAGAGGTTGAACAAAAAAAAATTGATTTTCTGCCCACTTTTAATGAAATAGCTACTAAAAAATTGTAGTATGCACGTTAGTTTAGTAAAACATTTGGATTCGGGGGGAGTCATTATTTGAATATCCACAGATACTATGTGTATCCGATATGTATCTAATACAACGATACGATTATTTTAAAAATTT
>Glyma18g47500.1 sequence type=CDS gene model=Glyma18g47500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCCACGTTGCTCTTCTTCGTGTCCCTCCTCCTCTTTCAATCTCCACTCAACGCTTCCATGCCAAACAGATTTGCATAAACGGACTCAAACTCACCAACACTTCTTCTTCTTCTTCTTCTTCTTCTTGTTTTCCATGTTCCATAACAACACAAAGAGGGTCTTGTTCCTCTGTGATTACATGTTCATCTTCAAATGGCAGAGACCCAAATTCGGTGGATGAGGAAGATGTAAAACAAGTGGAGCGCATTCTCGAAGAGAAACGACGAGCTGCATTGTCTGCTAAGATTGCCTCTGGGGAATTCACCGTGAAGCAGAAATCTGGTTTACTTTCAATAATGGAGGGCTTGGCAAAGGTGGGGGTGCCCAATGAAGTTCTGGAATTTTTGTTTGGTTGGTTTGAAGGGGGTGGCGAGCACCCGAAAATTCCTGAGGCAAAAGGGTCAATCAAAGCTGTTCGAAGTGTGGCCTTCTTCATTCCCTTGTATGAACTTTACCTCACATATGGTGGGATTTTTAGGTTGACCTTTGGACCAAAGTCCTTTCTAATAGTATCAGATCCCTCTATTGCAAAACACATATTGAGAGAGAATTCAAAGGCTTATTCAAAGGGTATCTTGGCTGAGATCCTAGACTTTGTAATGGGGAAAGGGCTTATCCCAGCTGATGGTGAAATATGGCGAGTTAGACGTCGTGCTATAGTCCCAGCATTGCACCAGAAGTATGTAGCAGCTATGATTGGCCTTTTTGGACAAGCTGCAGATCGGCTCTGCCAGAAGCTAGATGCTGCTGCATCTGATGGAGAAGATGTTGAGATGGAATCACTTTTCTCTCGATTGACCTTGGACATCATTGGCAAGGCAGTATTCAATTATGATTTTGATAGTTTATCAAATGACACTGGTATAGTTGAGGCTGTTTATACTGTACTGAGAGAAGCAGAAGATCGAAGTGTTGCTCCAATTCCAGTCTGGGAGATCCCAATATGGAAAGACGTATCACCACGTCTAAGGAAGGTTAATGCAGCTCTCAAATTAATCAATGATACGCTTGATGATCTGATAGCAATATGCAAGAGAATGGTGGATGAAGAAGAGTTACAGTTTCATGAGGAGTACATGAATGAGCAAGATCCAAGTATTCTACACTTCTTGTTGGCGTCAGGAGATGATGTGTCAAGTAAGCAACTTCGTGATGACTTAATGACCATGCTCATTGCTGGACATGAAACATCAGCTGCTGTTTTAACTTGGACCTTTTATCTTCTATCCAAGGAGCCAAGAGTCATGTCCAAGCTCCAAGAAGAGGTTGACTCTGTACTTGGAGATCAATATCCAACTATAGAAGACATGAAGAAACTCAAATATACAACCCGAGTGATCAATGAGTCATTGAGGCTTTACCCACAACCACCTGTGTTAATTCGCCGCTCTCTTGAGGATGATGTTCTTGGAGAGTACCCTATAAAGAGAAATGAAGATATCTTTATATCTGTCTGGAACCTACATCGCAGTCCAAAACTGTGGGATGATGCTGATAAATTCGAACCTGAAAGATGGGCATTAGATGGACCAAGTCCTAATGAGACAAATCAAAACTTCAAATATCTTCCGTTTGGTGGCGGACCACGGAAATGTGTAGGTGATTTGTTTGCTTCCTACGAGACTGTGGTAGCACTCGCAATGCTTGTTAGACGATTCAACTTTCAAATAGCAGTTGGAGCTCCACCGGTTGAGATGACTACTGGAGCTACAATTCATACAACACAAGGGTTGAAGATGACTGTAACTCACAGAATAAAACCTCCTATTGTGCCCTCATTACAGATGTCAACTTTGGAAGTGGATCCATCCATAAGCCTTTCTGATCAAGATGAAGTAAGTCAGAAAGGCGAAGTTTACCAGGCTCAGGCTCAGTCCTAA >Glyma18g47500.2 sequence type=CDS gene model=Glyma18g47500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTGCTGCTGTACAATTGCTTTTCTGTTCTCTCCCTTCTTTCATACATACCTGCATGTTATTCTTAGTACTTTATGTGCAGGGTATCTTGGCTGAGATCCTAGACTTTGTAATGGGGAAAGGGCTTATCCCAGCTGATGGTGAAATATGGCGAGTTAGACGTCGTGCTATAGTCCCAGCATTGCACCAGAAGTATGTAGCAGCTATGATTGGCCTTTTTGGACAAGCTGCAGATCGGCTCTGCCAGAAGCTAGATGCTGCTGCATCTGATGGAGAAGATGTTGAGATGGAATCACTTTTCTCTCGATTGACCTTGGACATCATTGGCAAGGCAGTATTCAATTATGATTTTGATAGTTTATCAAATGACACTGGTATAGTTGAGGCTGTTTATACTGTACTGAGAGAAGCAGAAGATCGAAGTGTTGCTCCAATTCCAGTCTGGGAGATCCCAATATGGAAAGACGTATCACCACGTCTAAGGAAGGTTAATGCAGCTCTCAAATTAATCAATGATACGCTTGATGATCTGATAGCAATATGCAAGAGAATGGTGGATGAAGAAGAGTTACAGTTTCATGAGGAGTACATGAATGAGCAAGATCCAAGTATTCTACACTTCTTGTTGGCGTCAGGAGATGATGTGTCAAGTAAGCAACTTCGTGATGACTTAATGACCATGCTCATTGCTGGACATGAAACATCAGCTGCTGTTTTAACTTGGACCTTTTATCTTCTATCCAAGGAGCCAAGAGTCATGTCCAAGCTCCAAGAAGAGGTTGACTCTGTACTTGGAGATCAATATCCAACTATAGAAGACATGAAGAAACTCAAATATACAACCCGAGTGATCAATGAGTCATTGAGGCTTTACCCACAACCACCTGTGTTAATTCGCCGCTCTCTTGAGGATGATGTTCTTGGAGAGTACCCTATAAAGAGAAATGAAGATATCTTTATATCTGTCTGGAACCTACATCGCAGTCCAAAACTGTGGGATGATGCTGATAAATTCGAACCTGAAAGATGGGCATTAGATGGACCAAGTCCTAATGAGACAAATCAAAACTTCAAATATCTTCCGTTTGGTGGCGGACCACGGAAATGTGTAGGTGATTTGTTTGCTTCCTACGAGACTGTGGTAGCACTCGCAATGCTTGTTAGACGATTCAACTTTCAAATAGCAGTTGGAGCTCCACCGGTTGAGATGACTACTGGAGCTACAATTCATACAACACAAGGGTTGAAGATGACTGTAACTCACAGAATAAAACCTCCTATTGTGCCCTCATTACAGATGTCAACTTTGGAAGTGGATCCATCCATAAGCCTTTCTGATCAAGATGAAGTAAGTCAGAAAGGCGAAGTTTACCAGGCTCAGGCTCAGTCCTAA
>Glyma18g47500.1 sequence type=predicted peptide gene model=Glyma18g47500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASHVALLRVPPPLSISTQRFHAKQICINGLKLTNTSSSSSSSSCFPCSITTQRGSCSSVITCSSSNGRDPNSVDEEDVKQVERILEEKRRAALSAKIASGEFTVKQKSGLLSIMEGLAKVGVPNEVLEFLFGWFEGGGEHPKIPEAKGSIKAVRSVAFFIPLYELYLTYGGIFRLTFGPKSFLIVSDPSIAKHILRENSKAYSKGILAEILDFVMGKGLIPADGEIWRVRRRAIVPALHQKYVAAMIGLFGQAADRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDSLSNDTGIVEAVYTVLREAEDRSVAPIPVWEIPIWKDVSPRLRKVNAALKLINDTLDDLIAICKRMVDEEELQFHEEYMNEQDPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPRVMSKLQEEVDSVLGDQYPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDVLGEYPIKRNEDIFISVWNLHRSPKLWDDADKFEPERWALDGPSPNETNQNFKYLPFGGGPRKCVGDLFASYETVVALAMLVRRFNFQIAVGAPPVEMTTGATIHTTQGLKMTVTHRIKPPIVPSLQMSTLEVDPSISLSDQDEVSQKGEVYQAQAQS* >Glyma18g47500.2 sequence type=predicted peptide gene model=Glyma18g47500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTAAVQLLFCSLPSFIHTCMLFLVLYVQGILAEILDFVMGKGLIPADGEIWRVRRRAIVPALHQKYVAAMIGLFGQAADRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDSLSNDTGIVEAVYTVLREAEDRSVAPIPVWEIPIWKDVSPRLRKVNAALKLINDTLDDLIAICKRMVDEEELQFHEEYMNEQDPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPRVMSKLQEEVDSVLGDQYPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDVLGEYPIKRNEDIFISVWNLHRSPKLWDDADKFEPERWALDGPSPNETNQNFKYLPFGGGPRKCVGDLFASYETVVALAMLVRRFNFQIAVGAPPVEMTTGATIHTTQGLKMTVTHRIKPPIVPSLQMSTLEVDPSISLSDQDEVSQKGEVYQAQAQS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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