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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07020 | AT | Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein | chr3:2218120-2221590 REVERSE LENGTH=637 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0016125 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol metabolic process | SoyBase | N/A | ISS |
| GO:0030259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid glycosylation | SoyBase | N/A | ISS |
| GO:0048316 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed development | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| GO:0016906 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sterol 3-beta-glucosyltransferase activity | SoyBase | N/A | ISS |
| GO:0051507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: beta-sitosterol UDP-glucosyltransferase activity | SoyBase | N/A | ISS |
| KOG1192 | KOG | UDP-glucuronosyl and UDP-glucosyl transferase | JGI | ISS | |
| PTHR11926 | Panther | GLUCOSYL/GLUCURONOSYL TRANSFERASES | JGI | ISS | |
| PTHR11926:SF61 | Panther | HYPOTHETICAL PROTEIN NCU11407 | JGI | ISS | |
| PF00201 | PFAM | UDP-glucoronosyl and UDP-glucosyl transferase | JGI | ISS | |
| PF03033 | PFAM | Glycosyltransferase family 28 N-terminal domain | JGI | ISS | |
| UniRef100_G7KQK6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sterol 3-beta-glucosyltransferase n=3 Tax=Medicago truncatula RepID=G7KQK6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N3W6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3W6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma18g47490 not represented in the dataset |
Glyma18g47490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g38830 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g239800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g47490.2 sequence type=transcript gene model=Glyma18g47490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCTTCCACGTGTCACCACCTTCATCTTTTCTGACGCCTTCTCCTTTCCCTTTCCCCAAAAAATTCAAAATCAAAATAAAAGAAAAAAAGGCAAAAGCATCTGAAAAACTATATACCTTCCTTCCGCAGCATCGCCATCAACCAAACTATTTTTTTTCTTTTTCCATATCCTTCCAAACAAACAAACCCTTACACACATCATTCGTTCTCCGATGGCCAAAGCGAACACTCACCTCCGCCGCGCTTCCTCTTCCTCCAGTGACATCTCAGTCTACTTGGACGCCGACAACACTTCCGTTCCCGCCGCTTCTTCCGGGCCTATTGACAGGAATCCATCCTCCTCTATGTTGTCGTTGTCGCCGTCGCGGAATGCCGAGGCTGCGCCGGTTGCTCAACCGGCCGATCAGGTTAACGGTAAGAATGCTGCTGTTGCTAAAGTTGATAGGAGCAAGGGAAGCAGTGCATTGGCGCTTGCCAAGTTCCTTGACGAGAAAGTTCCCTTCAAGAAAAAGATGCGATGGATAAAACGGGCTTCCATACTTAAGGATGATGGTACAGTTGAAATTAAAGTATCAGGAGAAGGAAGTAATATTGAGCATGATGTTAAATGCGATGAATCTCATGATGAATTTTGCGATGCAATACACAGTCAGGATATTCAGCCTATTGAACCACTTCAAATCGTAATGCTTATAGTTGGCACACGGGGAGATGTCCAACCATTTGTTGCCATGGGGAAGCGTCTTCAGGAAGATGGCCACAGGGTTAGGCTAGCTACTCATAAGAACTTTGAAGATTTTGTCATGAATGCAGGCTTGGAGTTTTACCCTTTGGGTGGAGATCCCAAAGTTCTCGCTGGTTATATGGTCAAGAATAAAGGCTTCTTGCCATCAGGACCTTCAGAAATACATACACAAAGAAATCAAATCAAGGATATTATTAATACTTTGCTCAAGGCATGCAATAGTCGTTACCCAGAGTCTAATGCCCCATTTAAAGCAGAAGCAATAATTGCCAATCCTCCAGCATATGGGCATACTCATGTTGCAGAATATCTAAAGGTTCCACTTCACATATTCTTCACAATGCCATGGACGCCTACTAGTGAATTTCCTCATCCTCTTTCCCGTGTTAAGCAACCAATTGGCTACAGACTCTCATATCAAATAGTTGATGCTTTAATCTGGCTTGGAATACGAGACTTGATAAATGAGTTTAGGAAGAAAGAGCTGAAGCTAAAGCCTATTACTTATCTAAGTGGATCTTACACTCACCCTTTTGATGTGCCCCATGGTTATATATGGAGCCCTCACTTAGTCCCTAAACCAAAAGACTGGGGACCTAAGATTGATGTGGTTGGATTTTGTTTCCTTGACCTTGCTTCAAATTATGTACCACCAAAATCGCTAGTAGATTGGCTTGAAGAGGGAGAAAAACCTATTTATGTTGGATTTGGTAGCCTTCCTTTACAACAACCAGAGAAAATGACGCAAATTATAATTCACGCTCTGGAAGAAACAGGGCAGAGAGGTGTCATCAACAAAGGCTGGGGTGGTCTTGGGTCTTTGGCAGAACAAAATAAATCTGTGTATTTATTGGACAACTGTCCGCATGATTGGCTGTTTCCCCGATGCACTGCAGTGGTACATCACGGGGGTGCTGGAACAACTGCCGCTGGTCTTAGAGCTGAATGCCCTACAACTATTGTACCTTTCTTTGGGGACCAGCCATTTTGGGGAGATCGGGTACGTGCTAGAGGAGTAGGTCCTGCACCCATCCCGGTGGATGAGTTTTCATTTGATAGGCTGGTTGATGCCATACACTTTATGCTGAAACCAGAGGTGAAAAAGCGTGCAGTTGAACTTGCTAATGCCATGAAAAATGAAAATGGGGTGCTAGGAGCGGTTAAAGCCTTCTATAAACATTATCCGGCCGAGTTCAAGCGATTAGCCTCCACAGCCGAACCCAAATCAGTTCATAAATATTTCTCTATACGAGGATGCTTTGGTTGCTCTAAATCTTCTGGATATAAATAGCTTTTTTCATGCATCGACCATAACAAAATGCATACAAAAAACCTGTCTTCATACAGCATACTCGTCCATGTAACCATGTCCGTTCTTCAATCTAATTCTGATGTATCAGCAATTGTGAAAAGTAAATTGCCCCGGTGATTTTGTTGAGTTTGAGCTTCACCAGAAGCATTTATGAAGGTTCCGGTATAGTCCAATTTACTGTCAAGATCTTGCTACTTTACTTTTTTCTTTTAGTGTAAGGTTTGCATGATATACCCCTCAACATTAACGAGTGTTTTTTAGAATATAACTAATCATTTTCTCTGCAATATTTCATGGACAAGAAGTTTGCAAACTTGTTGGATTATTTGTGTACTGGCCTTTTTCAAGTATTATATTCAAACTACTGTGAAATATCCAAACTCTTATCACCTGTTGCAAAAGTTAACATCAAAATATTATCCTTTGATGAACAAGAAACCGTTTTACTAATAATTTCAAGAAAATAG
>Glyma18g47490.1 sequence type=CDS gene model=Glyma18g47490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTCGTTGTCGCCGTCGCGGAATGCCGAGGCTGCGCCGGTTGCTCAACCGGCCGATCAGGTTAACGGTAAGAATGCTGCTGTTGCTAAAGTTGATAGGAGCAAGGGAAGCAGTGCATTGGCGCTTGCCAAGTTCCTTGACGAGAAAGTTCCCTTCAAGAAAAAGATGCGATGGATAAAACGGGCTTCCATACTTAAGGATGATGGTACAGTTGAAATTAAAGTATCAGGAGAAGGAAGTAATATTGAGCATGATGTTAAATGCGATGAATCTCATGATGAATTTTGCGATGCAATACACAGTCAGGATATTCAGCCTATTGAACCACTTCAAATCGTAATGCTTATAGTTGGCACACGGGGAGATGTCCAACCATTTGTTGCCATGGGGAAGCGTCTTCAGGAAGATGGCCACAGGGTTAGGCTAGCTACTCATAAGAACTTTGAAGATTTTGTCATGAATGCAGGCTTGGAGTTTTACCCTTTGGGTGGAGATCCCAAAGTTCTCGCTGGTTATATGGTCAAGAATAAAGGCTTCTTGCCATCAGGACCTTCAGAAATACATACACAAAGAAATCAAATCAAGGATATTATTAATACTTTGCTCAAGGCATGCAATAGTCGTTACCCAGAGTCTAATGCCCCATTTAAAGCAGAAGCAATAATTGCCAATCCTCCAGCATATGGGCATACTCATGTTGCAGAATATCTAAAGGTTCCACTTCACATATTCTTCACAATGCCATGGACGCCTACTAGTGAATTTCCTCATCCTCTTTCCCGTGTTAAGCAACCAATTGGCTACAGACTCTCATATCAAATAGTTGATGCTTTAATCTGGCTTGGAATACGAGACTTGATAAATGAGTTTAGGAAGAAAGAGCTGAAGCTAAAGCCTATTACTTATCTAAGTGGATCTTACACTCACCCTTTTGATGTGCCCCATGGTTATATATGGAGCCCTCACTTAGTCCCTAAACCAAAAGACTGGGGACCTAAGATTGATGTGGTTGGATTTTGTTTCCTTGACCTTGCTTCAAATTATGTACCACCAAAATCGCTAGTAGATTGGCTTGAAGAGGGAGAAAAACCTATTTATGTTGGATTTGGTAGCCTTCCTTTACAACAACCAGAGAAAATGACGCAAATTATAATTCACGCTCTGGAAGAAACAGGGCAGAGAGGTGTCATCAACAAAGGCTGGGGTGGTCTTGGGTCTTTGGCAGAACAAAATAAATCTGTGTATTTATTGGACAACTGTCCGCATGATTGGCTGTTTCCCCGATGCACTGCAGTGGTACATCACGGGGGTGCTGGAACAACTGCCGCTGGTCTTAGAGCTGAATGCCCTACAACTATTGTACCTTTCTTTGGGGACCAGCCATTTTGGGGAGATCGGGTACGTGCTAGAGGAGTAGGTCCTGCACCCATCCCGGTGGATGAGTTTTCATTTGATAGGCTGGTTGATGCCATACACTTTATGCTGAAACCAGAGGTGAAAAAGCGTGCAGTTGAACTTGCTAATGCCATGAAAAATGAAAATGGGGTGCTAGGAGCGGTTAAAGCCTTCTATAAACATTATCCGGCCGAGTTCAAGCGATTAGCCTCCACAGCCGAACCCAAATCAGTTCATAAATATTTCTCTATACGAGGATGCTTTGGTTGCTCTAAATCTTCTGGATATAAATAG >Glyma18g47490.2 sequence type=CDS gene model=Glyma18g47490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAAAGCGAACACTCACCTCCGCCGCGCTTCCTCTTCCTCCAGTGACATCTCAGTCTACTTGGACGCCGACAACACTTCCGTTCCCGCCGCTTCTTCCGGGCCTATTGACAGGAATCCATCCTCCTCTATGTTGTCGTTGTCGCCGTCGCGGAATGCCGAGGCTGCGCCGGTTGCTCAACCGGCCGATCAGGTTAACGGTAAGAATGCTGCTGTTGCTAAAGTTGATAGGAGCAAGGGAAGCAGTGCATTGGCGCTTGCCAAGTTCCTTGACGAGAAAGTTCCCTTCAAGAAAAAGATGCGATGGATAAAACGGGCTTCCATACTTAAGGATGATGGTACAGTTGAAATTAAAGTATCAGGAGAAGGAAGTAATATTGAGCATGATGTTAAATGCGATGAATCTCATGATGAATTTTGCGATGCAATACACAGTCAGGATATTCAGCCTATTGAACCACTTCAAATCGTAATGCTTATAGTTGGCACACGGGGAGATGTCCAACCATTTGTTGCCATGGGGAAGCGTCTTCAGGAAGATGGCCACAGGGTTAGGCTAGCTACTCATAAGAACTTTGAAGATTTTGTCATGAATGCAGGCTTGGAGTTTTACCCTTTGGGTGGAGATCCCAAAGTTCTCGCTGGTTATATGGTCAAGAATAAAGGCTTCTTGCCATCAGGACCTTCAGAAATACATACACAAAGAAATCAAATCAAGGATATTATTAATACTTTGCTCAAGGCATGCAATAGTCGTTACCCAGAGTCTAATGCCCCATTTAAAGCAGAAGCAATAATTGCCAATCCTCCAGCATATGGGCATACTCATGTTGCAGAATATCTAAAGGTTCCACTTCACATATTCTTCACAATGCCATGGACGCCTACTAGTGAATTTCCTCATCCTCTTTCCCGTGTTAAGCAACCAATTGGCTACAGACTCTCATATCAAATAGTTGATGCTTTAATCTGGCTTGGAATACGAGACTTGATAAATGAGTTTAGGAAGAAAGAGCTGAAGCTAAAGCCTATTACTTATCTAAGTGGATCTTACACTCACCCTTTTGATGTGCCCCATGGTTATATATGGAGCCCTCACTTAGTCCCTAAACCAAAAGACTGGGGACCTAAGATTGATGTGGTTGGATTTTGTTTCCTTGACCTTGCTTCAAATTATGTACCACCAAAATCGCTAGTAGATTGGCTTGAAGAGGGAGAAAAACCTATTTATGTTGGATTTGGTAGCCTTCCTTTACAACAACCAGAGAAAATGACGCAAATTATAATTCACGCTCTGGAAGAAACAGGGCAGAGAGGTGTCATCAACAAAGGCTGGGGTGGTCTTGGGTCTTTGGCAGAACAAAATAAATCTGTGTATTTATTGGACAACTGTCCGCATGATTGGCTGTTTCCCCGATGCACTGCAGTGGTACATCACGGGGGTGCTGGAACAACTGCCGCTGGTCTTAGAGCTGAATGCCCTACAACTATTGTACCTTTCTTTGGGGACCAGCCATTTTGGGGAGATCGGGTACGTGCTAGAGGAGTAGGTCCTGCACCCATCCCGGTGGATGAGTTTTCATTTGATAGGCTGGTTGATGCCATACACTTTATGCTGAAACCAGAGGTGAAAAAGCGTGCAGTTGAACTTGCTAATGCCATGAAAAATGAAAATGGGGTGCTAGGAGCGGTTAAAGCCTTCTATAAACATTATCCGGCCGAGTTCAAGCGATTAGCCTCCACAGCCGAACCCAAATCAGTTCATAAATATTTCTCTATACGAGGATGCTTTGGTTGCTCTAAATCTTCTGGATATAAATAG
>Glyma18g47490.1 sequence type=predicted peptide gene model=Glyma18g47490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSLSPSRNAEAAPVAQPADQVNGKNAAVAKVDRSKGSSALALAKFLDEKVPFKKKMRWIKRASILKDDGTVEIKVSGEGSNIEHDVKCDESHDEFCDAIHSQDIQPIEPLQIVMLIVGTRGDVQPFVAMGKRLQEDGHRVRLATHKNFEDFVMNAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIHTQRNQIKDIINTLLKACNSRYPESNAPFKAEAIIANPPAYGHTHVAEYLKVPLHIFFTMPWTPTSEFPHPLSRVKQPIGYRLSYQIVDALIWLGIRDLINEFRKKELKLKPITYLSGSYTHPFDVPHGYIWSPHLVPKPKDWGPKIDVVGFCFLDLASNYVPPKSLVDWLEEGEKPIYVGFGSLPLQQPEKMTQIIIHALEETGQRGVINKGWGGLGSLAEQNKSVYLLDNCPHDWLFPRCTAVVHHGGAGTTAAGLRAECPTTIVPFFGDQPFWGDRVRARGVGPAPIPVDEFSFDRLVDAIHFMLKPEVKKRAVELANAMKNENGVLGAVKAFYKHYPAEFKRLASTAEPKSVHKYFSIRGCFGCSKSSGYK* >Glyma18g47490.2 sequence type=predicted peptide gene model=Glyma18g47490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKANTHLRRASSSSSDISVYLDADNTSVPAASSGPIDRNPSSSMLSLSPSRNAEAAPVAQPADQVNGKNAAVAKVDRSKGSSALALAKFLDEKVPFKKKMRWIKRASILKDDGTVEIKVSGEGSNIEHDVKCDESHDEFCDAIHSQDIQPIEPLQIVMLIVGTRGDVQPFVAMGKRLQEDGHRVRLATHKNFEDFVMNAGLEFYPLGGDPKVLAGYMVKNKGFLPSGPSEIHTQRNQIKDIINTLLKACNSRYPESNAPFKAEAIIANPPAYGHTHVAEYLKVPLHIFFTMPWTPTSEFPHPLSRVKQPIGYRLSYQIVDALIWLGIRDLINEFRKKELKLKPITYLSGSYTHPFDVPHGYIWSPHLVPKPKDWGPKIDVVGFCFLDLASNYVPPKSLVDWLEEGEKPIYVGFGSLPLQQPEKMTQIIIHALEETGQRGVINKGWGGLGSLAEQNKSVYLLDNCPHDWLFPRCTAVVHHGGAGTTAAGLRAECPTTIVPFFGDQPFWGDRVRARGVGPAPIPVDEFSFDRLVDAIHFMLKPEVKKRAVELANAMKNENGVLGAVKAFYKHYPAEFKRLASTAEPKSVHKYFSIRGCFGCSKSSGYK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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