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Report for Sequence Feature Glyma18g47465

Feature Type:gene_model
Chromosome:Gm18
Start:57106836
stop:57110075
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g47465
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G16130AT Annotation by Michelle Graham. TAIR10: wall associated kinase-like 2 | chr1:5525634-5528047 FORWARD LENGTH=748 SoyBaseE_val: 9.00E-139ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF444Panther SUBFAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF01476PFAM LysM domain JGI ISS
UniRef100_D3KU57UniRef Annotation by Michelle Graham. Most informative UniRef hit: LysM type receptor kinase n=1 Tax=Lotus japonicus RepID=D3KU57_LOTJA SoyBaseE_val: 0ISS
UniRef100_UPI000233EE09UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EE09 related cluster n=1 Tax=unknown RepID=UPI000233EE09 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g47465
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g47465 not represented in the dataset
Glyma18g47465 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47465
ParalogEvidenceComments
Glyma09g38850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47465 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g239600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g47465
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g47465
>Glyma18g47465.1   sequence type=CDS   gene model=Glyma18g47465   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTTTTTCACAACCTCAACATTTTCAGCACAATTCTGCTCCTATGCATGTTTCCTCACTCACTCAAGTGCCAACAAGCATACCTCAATGGCACTGTCTATGACTGTTCTGATAACCCTTCAGCACCAAAAGGGTATCTTTGCAATGGCCTTCAGAAGTCATGCACCTCCTTCTTACTTTTCAGGTCAAAACCTCCCTATGATAGCCCTGGGATAATTGCTTACCTTCTTGGCTCTGAGGCATCTACCATAGCCTCAATCAACAGGATCTCAAGAAATGACAAGATTCCTTCCAATAAGTCAATCATTGTTCCTGTGTTCTGTTCATGTTCAGGAAACATCTACCAGCATAACACACCTTACACTGCCAGCAAGAATGACACCTACTATGAGTTGGTAAAAGAAACCTTCCAAGGCCTCACCACATGTCAGGCTATGATGGGTCAGAATTACTATGCTTCAATCAACATTGCAATTGGTGCTGAGCTCACAGTTCCAATGTTGTGTGCTTGTCCAACTGAAAATCAGACAGCAAGAGGGGTCACCTCTTTGCTGGTTCACTTGGTGAACTATGGTGACACTATTAAGTCCATAGGAAGGGCCTATGGTGTGGATGAACAAAGTGTGCTAGAGGCCAATAAGTTGGCAGTTTCACAAAGTAAAAACAGCAGCATGGACCTCCTTGCCTTGACACCTATTATAGTTCCTCTAATAGGGAAGAGCTGCAAAGAGAACCCAGATAAATTCTATTGTAGATGTTACCAAGCACCAGATGGAAGCTCCAAGGGGCCCTTCTGTGATGAATCTGATGGTCAGAAATTCCCTGCCAAATTGGTTGCTGGTTTAGGAGTTGGAATTGGTGCAGGCTTTTTGTGTTTGTTTCTTTTGGGGTACAAGTCATATCAATACATACAGAAAAAGAGAGAAACTATCCTTAAGGAAAAGTTATTCAGGCAAAATGGTGGCTACTTGTTACAAGAGAAGCTCTCTTCTTATGGAAATGGAGAAATGGCAAAGCTTTTTACAGCTGAGGAGCTGCAAAGAGCAACAGATAACTACAATAGGAGCAGGTTTCTTGGTCAAGGTGGTTATGGCACAGTGTACAAAGGAATGTTACTAGATGGAACCATTGTTGCAGTTAAAAAGTCAAAAGAGATTGAAAGGAACCAGATACAGACTTTTGTCAATGAAGTAGTCGTATTATCTCAGATCAACCACAGGAACATTGTAAAACTATTAGGTTGTTGTCTTGAGACAGAAACTCCAATACTAGTCTATGAATTCATTCCCAATGGAACACTGTCCCATCACATACATAGGAGAGACAATGAACCCTCCCCTTCATGGATTAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGAGCAGTGGCATACATGCATTTTGCAGCATCTATTTCCATTTTCCATAGAGACATCAAACCCACCAACATACTTTTAGACAGTAACTACAGTGCCAAAGTGTCTGATTTTGGAACATCAAGATCAGTTCCACTAGATAAGACTCATTTAACCACAGCTGTTGGAGGAACTTTTGGATACATAGACCCTGAATATTTTCAGTCTAGTCAATTTTCAGATAAGAGTGATGTGTATAGTTTTGGAGTTGTGCTTGTAGAGCTCATAACTGGGAGAAAGCCAATTTCATTCTTATATGAAGATGAGGGTCAGAATTTGATTGCACAATTCATTTCTTTGATGAAGGAGAACCAAGTTTTTGAAATTTTAGATGCCAGTTTGCTTAAGGAAGCAAGGAAAGATGACATTCTTGCCATTGCAAATCTTGCAATGAGATGCTTGAGGCTGAATGGGAAGAAAAGACCAACAATGAAAGAGGTTTCAACAGAATTGGAAGCATTGAGAAAGGCACAAAGTTCATTACAGATGAACCATGATCATGAGCACACAACTAGTGACATAGTTCAAGAATGCACAGAGGAAAGCATGTCACTGCCCTTACATCTAGAGTTTACATCCTTTTAG
Predicted protein sequences of Glyma18g47465
>Glyma18g47465.1   sequence type=predicted peptide   gene model=Glyma18g47465   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELFHNLNIFSTILLLCMFPHSLKCQQAYLNGTVYDCSDNPSAPKGYLCNGLQKSCTSFLLFRSKPPYDSPGIIAYLLGSEASTIASINRISRNDKIPSNKSIIVPVFCSCSGNIYQHNTPYTASKNDTYYELVKETFQGLTTCQAMMGQNYYASINIAIGAELTVPMLCACPTENQTARGVTSLLVHLVNYGDTIKSIGRAYGVDEQSVLEANKLAVSQSKNSSMDLLALTPIIVPLIGKSCKENPDKFYCRCYQAPDGSSKGPFCDESDGQKFPAKLVAGLGVGIGAGFLCLFLLGYKSYQYIQKKRETILKEKLFRQNGGYLLQEKLSSYGNGEMAKLFTAEELQRATDNYNRSRFLGQGGYGTVYKGMLLDGTIVAVKKSKEIERNQIQTFVNEVVVLSQINHRNIVKLLGCCLETETPILVYEFIPNGTLSHHIHRRDNEPSPSWISRLRIACEVAGAVAYMHFAASISIFHRDIKPTNILLDSNYSAKVSDFGTSRSVPLDKTHLTTAVGGTFGYIDPEYFQSSQFSDKSDVYSFGVVLVELITGRKPISFLYEDEGQNLIAQFISLMKENQVFEILDASLLKEARKDDILAIANLAMRCLRLNGKKRPTMKEVSTELEALRKAQSSLQMNHDHEHTTSDIVQECTEESMSLPLHLEFTSF*






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