Report for Sequence Feature Glyma18g47420
Feature Type: gene_model
Chromosome: Gm18
Start: 57080181
stop: 57082699
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g47420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G46170 AT
Annotation by Michelle Graham. TAIR10: Reticulon family protein | chr2:18965410-18966940 FORWARD LENGTH=255
SoyBase E_val: 1.00E-111 ISS
GO:0006007 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucose catabolic process
SoyBase N/A ISS
GO:0080167 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to karrikin
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
KOG1792
KOG
Reticulon
JGI ISS
PTHR10994 Panther
RETICULON/NOGO
JGI ISS
PTHR10994:SF27 Panther
RETICULON-RELATED (PLANT)
JGI ISS
PF02453 PFAM
Reticulon
JGI ISS
UniRef100_B3TLN1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 24 kDa seed maturation protein n=1 Tax=Elaeis guineensis RepID=B3TLN1_ELAGV
SoyBase E_val: 1.00E-112 ISS
UniRef100_C6TGE9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=2 Tax=Glycine max RepID=C6TGE9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g47420
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g47420
Paralog Evidence Comments
Glyma09g38890 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g47420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g239300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g47420
Coding sequences of Glyma18g47420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g47420.1 sequence type=CDS gene model=Glyma18g47420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGAGGAACCGGAGAGCACCGTCACCAACGGCGCCGCCGACGAATCGCTGCTCGATAAGATCACCGAGAAGCTTCACGGCCACGATTCTTCGTCCTCTTCATCTTCCGACTCCGACTCCGACTCCGAAAAAACCGTTACTTCCTCCGTTAAGGATAAGGTTTTTCGCCTCTTCGGAAGGGAGAGACCCGTTCACTCCGTTTTCGGCGCCGGAAAACCTGCTGATGTGTTATTGTGGAGGAACAAGAAAATTTCTGCTGGCATGCTTGGCGGAGCCACTGCTGTTTGGGTTCTTTTTGAGTTGCTTGAGTATCACCTTCTTACTCTGGTGTGTCACATTTTGATACTGTTGCTCGCAGTTCTGTTCTTGTGGTCCAATGCCCATACTTTCATCCACAAATCTCCACCTCGCATTCCGGAATTTCATCTTCCAGAGGAGCCATTCCTGCAAGTTGCGTCTGCATTGAGAATTGAAGTCAACCGGGGATTTGCTGTTTTGCATAGTATTGGCTCTGGAAGGGACTTGAAGAAATTCCTAGTGGTTATTGCTAGCGTATGGATTCTGTCAATTGTGGGGAACTGGTGCAATTTCTTGACCCTGTTCTACATAACTTTTATCTTGTTGCACACGGTTCCTGTGCTATATGAGAAGTACGATGATAAGATAGATCCACTTGCAGAGAAGGCAGTTATTGAGATTAAAAAGCAGTATGCTGTGTTTGATGCTAAGGTCTTGAGTAAGATCCCATTGGGTCCATTGAAAGCCAAGTTATCTTAG
Predicted protein sequences of Glyma18g47420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g47420.1 sequence type=predicted peptide gene model=Glyma18g47420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAEEPESTVTNGAADESLLDKITEKLHGHDSSSSSSSDSDSDSEKTVTSSVKDKVFRLFGRERPVHSVFGAGKPADVLLWRNKKISAGMLGGATAVWVLFELLEYHLLTLVCHILILLLAVLFLWSNAHTFIHKSPPRIPEFHLPEEPFLQVASALRIEVNRGFAVLHSIGSGRDLKKFLVVIASVWILSIVGNWCNFLTLFYITFILLHTVPVLYEKYDDKIDPLAEKAVIEIKKQYAVFDAKVLSKIPLGPLKAKLS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
