Glyma18g47400 - SoyBase

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Report for Sequence Feature Glyma18g47400

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57062696
stop:	57067194
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36470	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:17215128-17216475 REVERSE LENGTH=371	SoyBase	E_val: 2.00E-82	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: S-adenosylmethionine-dependent methyltransferase activity	SoyBase	N/A	ISS
PF03492	PFAM	SAM dependent carboxyl methyltransferase	JGI		ISS
UniRef100_G7J763	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Salicylic acid/benzoic acid carboxyl methyltransferase n=1 Tax=Medicago truncatula RepID=G7J763_MEDTR	SoyBase	E_val: 3.00E-134	ISS
UniRef100_I1N3W0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N3W0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g47400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g239100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47400

Limit To All Plant Sequences

>Glyma18g47400.1   sequence type=CDS   gene model=Glyma18g47400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCATTGGGTGCATCAAGTGGAAGAGAGCTATTGCTTCACATGAATGGTGGCACGGGAAAAAGGAGTTATGCCAACAACTCTTCGTTCCAAAAAAAATTAATGCTTAAAGCCAAACCAATGCTTGAAGAAACTATAACAAGACTGTATCGTGATTCTTCTCCAAACTGCATGAAAGTAGCAGATTTAGGTTGCTCTGTAGGACCAAACACACTTCTTGTGACATCAAATATTATTGATATTGTTGATACCACATGCACCCGCTTGAATCGTGAACCACCCATATTCCAATTTTTTCTCAATGATTTATTTGGAAATGATTTCAATACCATCTTCAAGTCACTTCCTGATTTCTATACAAGATTGCAAGGAGATAAGGGAAATGAATTTGGTTCATGCTTTATTAATGCCACCCCTGGATCCTTCCATGGGAGGCTCTTTCCTAGTAATTCCATAAACTTTTTTCATTCTGCCAACAGTCTACACTGGCTCTCTCAGGATCCGTTATCAGGGTTGACTAAGGAGACAAAATCACTTAACAAGGGCAACTGTCACATAGTTAGCACAAGCCCTTCAGAGGTGTACAAAGCTTACTTTAAGCAGTTTCAAGAAGGTTTTAAATCATTTCTAAAATCGCGTTCGGAGGAACTTGTGCCTGGAGGAGCAATGGTCTTAGTGTTACCTTGCACTTGCAAAAATGAAACTCTTTCAAAAAGCCTTTGGGAAGTAATAAGCCTAACACTGAATGACATGCTCTCGGAGGGTTTGATTGAAGAAGCAAAATTGGACTCTTTTAACATACCAACGTATGAGCCTACAATTGAGGAAATTAGGCATTTGATTAAGGAAGAAGAGTCATTGTTTCTTCAAAGATTAGAGGTTTTCACCGTGCCTAGGGATGAGGGTGTAAGTGAATGTGGTGATGATTTCTTTCTTGATGGAAATATAAGAGCTGAATTCATAGCCACATACACAAGAGCTGCAATGGAGCCTCTCTTATCTGCAAAGTTTGAGGCACAAGTTATAAATGAATTGTTTATCAGGTTTCGAAAGAAACTTGTGCAAATAATGAAGGTGGAGAAATTTGAGACTGCTAATTTGATGATATCCATGACAAAAATTGCTCGAAGAAGTGTTTAA

Predicted protein sequences of Glyma18g47400

Limit To All Plant Sequences

>Glyma18g47400.1   sequence type=predicted peptide   gene model=Glyma18g47400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSLGASSGRELLLHMNGGTGKRSYANNSSFQKKLMLKAKPMLEETITRLYRDSSPNCMKVADLGCSVGPNTLLVTSNIIDIVDTTCTRLNREPPIFQFFLNDLFGNDFNTIFKSLPDFYTRLQGDKGNEFGSCFINATPGSFHGRLFPSNSINFFHSANSLHWLSQDPLSGLTKETKSLNKGNCHIVSTSPSEVYKAYFKQFQEGFKSFLKSRSEELVPGGAMVLVLPCTCKNETLSKSLWEVISLTLNDMLSEGLIEEAKLDSFNIPTYEPTIEEIRHLIKEEESLFLQRLEVFTVPRDEGVSECGDDFFLDGNIRAEFIATYTRAAMEPLLSAKFEAQVINELFIRFRKKLVQIMKVEKFETANLMISMTKIARRSV*

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