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Report for Sequence Feature Glyma18g47390

Feature Type:gene_model
Chromosome:Gm18
Start:57057360
stop:57061421
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36470AT Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:17215128-17216475 REVERSE LENGTH=371 SoyBaseE_val: 5.00E-79ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008168GO-mf Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity SoyBaseN/AISS
GO:0008757GO-mf Annotation by Michelle Graham. GO Molecular Function: S-adenosylmethionine-dependent methyltransferase activity SoyBaseN/AISS
PF03492PFAM SAM dependent carboxyl methyltransferase JGI ISS
UniRef100_G7J763UniRef Annotation by Michelle Graham. Most informative UniRef hit: Salicylic acid/benzoic acid carboxyl methyltransferase n=1 Tax=Medicago truncatula RepID=G7J763_MEDTR SoyBaseE_val: 2.00E-132ISS
UniRef100_I1N3V9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3V9_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g239000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g47390.3   sequence type=transcript   gene model=Glyma18g47390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACTTTGTTCCTTGCAGTTGCAGCCTAATTTGAAAATTGATTATTGCAATTCAACTAGGCGTAAAATCATCACGCCTTATTTGAAAATTGGTCACTGCAATAACTCAACTCATCTAAGCCACGTTGCATGTCCCAGTGAAATCAAACAAATATATAGTAGTATTTATCAATCAAAAGGGTCTATAAATACTGAAAACTTAAATCAAGGAAGTGGAGAGCTATATAGGAAAAAAGCGGAAGCTTGCAGCAGATCTTTTGGCTAGAGAGGGCAAGGCACGACTCAGTTTAATTAATTCAGCGGGTAATACTTGATAGATTGATCATGGGTTCATTGGGTACATCAAATGGAAGAGAGCTATTGCTTCACATGAATGGTGGCAAGGGAGAAAGGAGTTATGCAAACAACTCCTCATTCCAAAAAAAATTAATGCTTAAAGCCAAATCAATACTTGAAGAAACCATAACCACACTGTACCGTGATTCTTCTCCAAACTGCATGAAAGTGGCAGACTTAGGATGCTCTGTAGGACCAAATACATTTCTTGTGACATCAAATATTATCGACATTGTTGATACCACAACTACCCTTTTGAATTGTGAACAACCCACCTTCCAATTTTATCTCAATGATTTATATGGAAACGATTTTAATACCATCTTCAAGTCACTTCCTGATTTCTATACAAGATTGGAAGAAGATAAGGGACACAAGTTTGGTTCATGCTTTATTAATGCTACCCCTGGATCCTTCCATGGGAGGCTCTTTCCCAGTAATTCCATAAACTTATTTCATTCTGCCAACAGTCTACACTGGCTCTCTCAGGATCCATTATCTGGGTTGACTGAGGAGGAGAAATCACTTAACAAGGGCAATTGTCACCTAGTTAGCACAAGCCCTTCAGAGGTATACAAAGCTTACTTTAAGCAGTTTCAAGAAGGTTTTAAATCATTTCTAAAATCACGTTCGGAGGAACTTGTGCCTGGAGGAGCAATGGTCTTGGTGTTACCTTGCACTTGCAAAAATGAAACTCTTTCAAAAAGCCTTTGGGAAGTAATAAGCCTTACACTGAATGACATGCTCTCGGAGGGTTTGATTGAAGAAGCAAAATTGGACTCTTTTAACATACCAACATATGAGCCTACAATTGAGGAAATCAGGCATTTGATTAAGGAAGAAGAGTCATTGTTTCTTCAAAGATTAGAGGTTTTCACGGTGCCTAGGGATGAGGGTGTAAGTGAATGTGGTGATGATGTTTTTCTTGATGGAAATATAAGAGCTGAATTCATAGCCACATACACAAGAGCTGCAATGGAGCCTCTCTTATCTGCAAAGTTTGACGCACAAGTTATAGATGAATTATTTATCCGGTTTCAGAAGAAACTTGTGCAAATAATGAAGGTGGAGAAATTTGAGACTGCTAATTTGATGATATCCCTGACAAAAATTGCTTGAAGAAGTACTGTTTCTCAATAGAAGGACACATCTTAAAAAGTAGTTTTTCTTTTGTGATTTTGATTTGATTTGGTGAAATTAAGTTATGGAGTAGAAGATGCTACGTACTCTTATTGAAGCTTGAGATCTGTATCAGTGTGTCACAAATCTTAATAATGACTTGTAGTAATATATACTTACTTATTTTTCTACTTAAAACAATATCAATGAAATAAAAACTTATGTTTCAATTAGAAGACTGGCCCAA

>Glyma18g47390.4   sequence type=transcript   gene model=Glyma18g47390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACTTTGTTCCTTGCAGTTGCAGCCTAATTTGAAAATTGATTATTGCAATTCAACTAGGCGTAAAATCATCACGCCTTATTTGAAAATTGGTCACTGCAATAACTCAACTCATCTAAGCCACGTTGCATGTCCCAGTGAAATCAAACAAATATATAGTAGTATTTATCAATCAAAAGGGTCTATAAATACTGAAAACTTAAATCAAGGAAGTGGAGAGCTATATAGGAAAAAAGCGGAAGCTTGCAGCAGATCTTTTGGCTAGAGAGGGCAAGGCACGACTCAGTTTAATTAAAAAATTAATGCTTAAAGCCAAATCAATACTTGAAGAAACCATAACCACACTGTACCGTGATTCTTCTCCAAACTGCATGAAAGTGGCAGACTTAGGATGCTCTGTAGGACCAAATACATTTCTTGTGACATCAAATATTATCGACATTGTTGATACCACAACTACCCTTTTGAATTGTGAACAACCCACCTTCCAATTTTATCTCAATGATTTATATGGAAACGATTTTAATACCATCTTCAAGTCACTTCCTGATTTCTATACAAGATTGGAAGAAGATAAGGGACACAAGTTTGGTTCATGCTTTATTAATGCTACCCCTGGATCCTTCCATGGGAGGCTCTTTCCCAGTAATTCCATAAACTTATTTCATTCTGCCAACAGTCTACACTGGCTCTCTCAGGATCCATTATCTGGGTTGACTGAGGAGGAGAAATCACTTAACAAGGGCAATTGTCACCTAGTTAGCACAAGCCCTTCAGAGGTATACAAAGCTTACTTTAAGCAGTTTCAAGAAGGTTTTAAATCATTTCTAAAATCACGTTCGGAGGAACTTGTGCCTGGAGGAGCAATGGTCTTGGTGTTACCTTGCACTTGCAAAAATGAAACTCTTTCAAAAAGCCTTTGGGAAGTAATAAGCCTTACACTGAATGACATGCTCTCGGAGGGTTTGATTGAAGAAGCAAAATTGGACTCTTTTAACATACCAACATATGAGCCTACAATTGAGGAAATCAGGCATTTGATTAAGGAAGAAGAGTCATTGTTTCTTCAAAGATTAGAGGTTTTCACGGTGCCTAGGGATGAGGGTGTAAGTGAATGTGGTGATGATGTTTTTCTTGATGGAAATATAAGAGCTGAATTCATAGCCACATACACAAGAGCTGCAATGGAGCCTCTCTTATCTGCAAAGTTTGACGCACAAGTTATAGATGAATTATTTATCCGGTTTCAGAAGAAACTTGTGCAAATAATGAAGGTGGAGAAATTTGAGACTGCTAATTTGATGATATCCCTGACAAAAATTGCTTGAAGAAGTACTGTTTCTCAATAGAAGGACACATCTTAAAAAGTAGTTTTTCTTTTGTGATTTTGATTTGATTTGGTGAAATTAAGTTATGGAGTAGAAGATGCTACGTACTCTTATTGAAGCTTGAGATCTGTATCAGTGTGTCACAAATCTTAATAATGACTTGTAGTAATATATACTTACTTATTTTTCTACTTAAAACAATATCAATGAAATAAAAACTTATGTTTCAATTAGAAGACTGGCCCAA

>Glyma18g47390.2   sequence type=CDS   gene model=Glyma18g47390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCATTGGGTACATCAAATGGAAGAGAGCTATTGCTTCACATGAATGGTGGCAAGGGAGAAAGGAGTTATGCAAACAACTCCTCATTCCAAAAAAAATTAATGCTTAAAGCCAAATCAATACTTGAAGAAACCATAACCACACTGTACCGTGATTCTTCTCCAAACTGCATGAAAGTGGCAGACTTAGGATGCTCTGTAGGACCAAATACATTTCTTGTGACATCAAATATTATCGACATTGTTGATACCACAACTACCCTTTTGAATTGTGAACAACCCACCTTCCAATTTTATCTCAATGATTTATATGGAAACGATTTTAATACCATCTTCAAGTCACTTCCTGATTTCTATACAAGATTGGAAGAAGATAAGGGACACAAGTTTGGTTCATGCTTTATTAATGCTACCCCTGGATCCTTCCATGGGAGGCTCTTTCCCAGTAATTCCATAAACTTATTTCATTCTGCCAACAGTCTACACTGGCTCTCTCAGGATCCATTATCTGGGTTGACTGAGGAGGAGAAATCACTTAACAAGGGCAATTGTCACCTAGTTAGCACAAGCCCTTCAGAGGTATACAAAGCTTACTTTAAGCAGTTTCAAGAAGGTTTTAAATCATTTCTAAAATCACGTTCGGAGGAACTTGTGCCTGGAGGAGCAATGGTCTTGGTGTTACCTTGCACTTGCAAAAATGAAACTCTTTCAAAAAGCCTTTGGGAAGTAATAAGCCTTACACTGAATGACATGCTCTCGGAGGGTTTGATTGAAGAAGCAAAATTGGACTCTTTTAACATACCAACATATGAGCCTACAATTGAGGAAATCAGGCATTTGATTAAGGAAGAAGAGTCATTGTTTCTTCAAAGATTAGAGGTTTTCACGGTGCCTAGGGATGAGGGTGTAAGTGAATGTGGTGATGATGTTTTTCTTGATGGAAATATAAGAGCTGAATTCATAGCCACATACACAAGAGCTGCAATGGAGCCTCTCTTATCTGCAAAGTTTGACGCACAAGTTATAGATGAATTATTTATCCGGTTTCAGAAGAAACTTGTGCAAATAATGAAGGTGGAGAAATTTGAGACTGCTAATTTGATGATATCCCTGACAAAAATTGCTTGA

>Glyma18g47390.3   sequence type=CDS   gene model=Glyma18g47390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCATTGGGTACATCAAATGGAAGAGAGCTATTGCTTCACATGAATGGTGGCAAGGGAGAAAGGAGTTATGCAAACAACTCCTCATTCCAAAAAAAATTAATGCTTAAAGCCAAATCAATACTTGAAGAAACCATAACCACACTGTACCGTGATTCTTCTCCAAACTGCATGAAAGTGGCAGACTTAGGATGCTCTGTAGGACCAAATACATTTCTTGTGACATCAAATATTATCGACATTGTTGATACCACAACTACCCTTTTGAATTGTGAACAACCCACCTTCCAATTTTATCTCAATGATTTATATGGAAACGATTTTAATACCATCTTCAAGTCACTTCCTGATTTCTATACAAGATTGGAAGAAGATAAGGGACACAAGTTTGGTTCATGCTTTATTAATGCTACCCCTGGATCCTTCCATGGGAGGCTCTTTCCCAGTAATTCCATAAACTTATTTCATTCTGCCAACAGTCTACACTGGCTCTCTCAGGATCCATTATCTGGGTTGACTGAGGAGGAGAAATCACTTAACAAGGGCAATTGTCACCTAGTTAGCACAAGCCCTTCAGAGGTATACAAAGCTTACTTTAAGCAGTTTCAAGAAGGTTTTAAATCATTTCTAAAATCACGTTCGGAGGAACTTGTGCCTGGAGGAGCAATGGTCTTGGTGTTACCTTGCACTTGCAAAAATGAAACTCTTTCAAAAAGCCTTTGGGAAGTAATAAGCCTTACACTGAATGACATGCTCTCGGAGGGTTTGATTGAAGAAGCAAAATTGGACTCTTTTAACATACCAACATATGAGCCTACAATTGAGGAAATCAGGCATTTGATTAAGGAAGAAGAGTCATTGTTTCTTCAAAGATTAGAGGTTTTCACGGTGCCTAGGGATGAGGGTGTAAGTGAATGTGGTGATGATGTTTTTCTTGATGGAAATATAAGAGCTGAATTCATAGCCACATACACAAGAGCTGCAATGGAGCCTCTCTTATCTGCAAAGTTTGACGCACAAGTTATAGATGAATTATTTATCCGGTTTCAGAAGAAACTTGTGCAAATAATGAAGGTGGAGAAATTTGAGACTGCTAATTTGATGATATCCCTGACAAAAATTGCTTGA

>Glyma18g47390.4   sequence type=CDS   gene model=Glyma18g47390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTAAAGCCAAATCAATACTTGAAGAAACCATAACCACACTGTACCGTGATTCTTCTCCAAACTGCATGAAAGTGGCAGACTTAGGATGCTCTGTAGGACCAAATACATTTCTTGTGACATCAAATATTATCGACATTGTTGATACCACAACTACCCTTTTGAATTGTGAACAACCCACCTTCCAATTTTATCTCAATGATTTATATGGAAACGATTTTAATACCATCTTCAAGTCACTTCCTGATTTCTATACAAGATTGGAAGAAGATAAGGGACACAAGTTTGGTTCATGCTTTATTAATGCTACCCCTGGATCCTTCCATGGGAGGCTCTTTCCCAGTAATTCCATAAACTTATTTCATTCTGCCAACAGTCTACACTGGCTCTCTCAGGATCCATTATCTGGGTTGACTGAGGAGGAGAAATCACTTAACAAGGGCAATTGTCACCTAGTTAGCACAAGCCCTTCAGAGGTATACAAAGCTTACTTTAAGCAGTTTCAAGAAGGTTTTAAATCATTTCTAAAATCACGTTCGGAGGAACTTGTGCCTGGAGGAGCAATGGTCTTGGTGTTACCTTGCACTTGCAAAAATGAAACTCTTTCAAAAAGCCTTTGGGAAGTAATAAGCCTTACACTGAATGACATGCTCTCGGAGGGTTTGATTGAAGAAGCAAAATTGGACTCTTTTAACATACCAACATATGAGCCTACAATTGAGGAAATCAGGCATTTGATTAAGGAAGAAGAGTCATTGTTTCTTCAAAGATTAGAGGTTTTCACGGTGCCTAGGGATGAGGGTGTAAGTGAATGTGGTGATGATGTTTTTCTTGATGGAAATATAAGAGCTGAATTCATAGCCACATACACAAGAGCTGCAATGGAGCCTCTCTTATCTGCAAAGTTTGACGCACAAGTTATAGATGAATTATTTATCCGGTTTCAGAAGAAACTTGTGCAAATAATGAAGGTGGAGAAATTTGAGACTGCTAATTTGATGATATCCCTGACAAAAATTGCTTGA

>Glyma18g47390.2   sequence type=predicted peptide   gene model=Glyma18g47390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSLGTSNGRELLLHMNGGKGERSYANNSSFQKKLMLKAKSILEETITTLYRDSSPNCMKVADLGCSVGPNTFLVTSNIIDIVDTTTTLLNCEQPTFQFYLNDLYGNDFNTIFKSLPDFYTRLEEDKGHKFGSCFINATPGSFHGRLFPSNSINLFHSANSLHWLSQDPLSGLTEEEKSLNKGNCHLVSTSPSEVYKAYFKQFQEGFKSFLKSRSEELVPGGAMVLVLPCTCKNETLSKSLWEVISLTLNDMLSEGLIEEAKLDSFNIPTYEPTIEEIRHLIKEEESLFLQRLEVFTVPRDEGVSECGDDVFLDGNIRAEFIATYTRAAMEPLLSAKFDAQVIDELFIRFQKKLVQIMKVEKFETANLMISLTKIA*

>Glyma18g47390.3   sequence type=predicted peptide   gene model=Glyma18g47390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSLGTSNGRELLLHMNGGKGERSYANNSSFQKKLMLKAKSILEETITTLYRDSSPNCMKVADLGCSVGPNTFLVTSNIIDIVDTTTTLLNCEQPTFQFYLNDLYGNDFNTIFKSLPDFYTRLEEDKGHKFGSCFINATPGSFHGRLFPSNSINLFHSANSLHWLSQDPLSGLTEEEKSLNKGNCHLVSTSPSEVYKAYFKQFQEGFKSFLKSRSEELVPGGAMVLVLPCTCKNETLSKSLWEVISLTLNDMLSEGLIEEAKLDSFNIPTYEPTIEEIRHLIKEEESLFLQRLEVFTVPRDEGVSECGDDVFLDGNIRAEFIATYTRAAMEPLLSAKFDAQVIDELFIRFQKKLVQIMKVEKFETANLMISLTKIA*

>Glyma18g47390.4   sequence type=predicted peptide   gene model=Glyma18g47390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKAKSILEETITTLYRDSSPNCMKVADLGCSVGPNTFLVTSNIIDIVDTTTTLLNCEQPTFQFYLNDLYGNDFNTIFKSLPDFYTRLEEDKGHKFGSCFINATPGSFHGRLFPSNSINLFHSANSLHWLSQDPLSGLTEEEKSLNKGNCHLVSTSPSEVYKAYFKQFQEGFKSFLKSRSEELVPGGAMVLVLPCTCKNETLSKSLWEVISLTLNDMLSEGLIEEAKLDSFNIPTYEPTIEEIRHLIKEEESLFLQRLEVFTVPRDEGVSECGDDVFLDGNIRAEFIATYTRAAMEPLLSAKFDAQVIDELFIRFQKKLVQIMKVEKFETANLMISLTKIA*







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