Glyma18g47370 - SoyBase

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Report for Sequence Feature Glyma18g47370

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57034963
stop:	57039100
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19640	AT	Annotation by Michelle Graham. TAIR10: jasmonic acid carboxyl methyltransferase \| chr1:6789166-6791708 REVERSE LENGTH=389	SoyBase	E_val: 1.00E-87	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009694	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0030795	GO-mf	Annotation by Michelle Graham. GO Molecular Function: jasmonate O-methyltransferase activity	SoyBase	N/A	ISS
PF03492	PFAM	SAM dependent carboxyl methyltransferase	JGI		ISS
UniRef100_G7J763	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Salicylic acid/benzoic acid carboxyl methyltransferase n=1 Tax=Medicago truncatula RepID=G7J763_MEDTR	SoyBase	E_val: 7.00E-140	ISS
UniRef100_I1N3V7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N3V7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47370

Paralog	Evidence	Comments
Glyma09g38970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g238800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g47370

Limit To All Plant Sequences

>Glyma18g47370.3   sequence type=transcript   gene model=Glyma18g47370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTAGTCCATGTTTTATTAAGGCAACCCCTGGATCCTTCTATGGGAGGCTCTTCCCCAGTAATTTCATAAATCTTTTTCATTCCTCCTACAGTCTACACTGCCTTTCTCAGATTCAATTCGTGCTTCATCAATGGAAAGATATCAACTATCCCTTCACATGAATGATGGCAATAAAGAACAGAGTTATGCAAACAACTCGTCGATGCAAAGAAGAGTAATAAGTAAAACCAAAACCATACTTGAAGAAACTATAATGAGGCTGTTGTATTGTGATTCTTCTCCTAGCTGCATGAAGGTGGCAGATCTAGGTTGCTCTGCGGGACCAAATACACTTCTTGTGATATCAAATATTATTGACATGGTTTATAAAGCAAGCACCCACTTGAATCATGAACCACCCACACTCCAATTTTATCTCAATGATTTATTTGGAAACGATTTCAATTCCATCTTCAAGTCACTCCCTGATTTCTGTAAAAGATTGATAGAAGATAAGGGTCATAATTTTGGTCCATGCTTTATTAACGCTACTCCTGGATCCTTCTATGGGAGGCTCTTTCCCAATAATTCCATAAACCTTTTTCATTCCTCCTACGGTCTACACTGGCTCTCTCAGGATCCATTATTGGGGTCTAGCGAGGCATCGTTACTTAACAAGGGCCATTGTTACATAGTTAACACAAGCCCTCCAGAGGTATACAAAGCTTACCTTAAGCAGTTTCAACAAGATTTTAAATTGTTTCTGAAATCACGTTCGAAGGAACTTGTGCCTGGAGGAGCAATGCTCTTGGTGTTACTTGGCAGAAATGAAATTCCTCCTACAGTAAACGGTTGGGAACCAATTAGTCTAATACTCAATGACATGTTCTTGGAGGGTTTGATTGAAGAAGCAAAATTAGACTCCTTCAACATACCAGTGTATCAACCTACAGTTGAAGAAATTAGGCATGTGATTCAGGAAGAAGGGTCATTCTATGTTCAACGATTAGAGATTTTCATCCAGCCTTTGGGTGAAAGCATAAATGACGGTGGTGATGATTCTTTTCTTGATGGAAATTTAAAAGCTGAATCAGTAGCCAAGCACATGAGAGCAATAATGGAGCCTCTTTTGTCCACAAAGTTTGGTGCAGAAGTTATAAATGAACTATTCACCAGGTTTCAAAAGAAAATTATGCAACTGATGGAGGTGGAGAAATCGGAGTGGGCTACTTTGATGATATCCATGATAAAAACTGCTTGAAGATGTTGCTCAATAAAAGATCTTAAAAACTTGTTTTTCTTCCTTTATGATTTTTTTTTTATTTGTTCAAATAAAGTTATGGAGCAGTAAGGACAAGGCATATCATAATAAAAGATGAACAACTGTGTGTTAATTAGTAGACAACATTTTTTCCCTTTCTATCCATTAGGATATGGTCATACACCAATAATATAAGGGTTGCTTATATTAATTTGCTTGTAATATTAGTTGTTAATATAAGATTTTTAATACTCTCTTCATTTTGAGGATTGGAGATCTCAAATGTGAATTTTATTAAAGTTAATATTTTTAATTGGTGC

Coding sequences of Glyma18g47370

Limit To All Plant Sequences

>Glyma18g47370.2   sequence type=CDS   gene model=Glyma18g47370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGATATCAACTATCCCTTCACATGAATGATGGCAATAAAGAACAGAGTTATGCAAACAACTCGTCGATGCAAAGAAGAGTAATAAGTAAAACCAAAACCATACTTGAAGAAACTATAATGAGGCTGTTGTATTGTGATTCTTCTCCTAGCTGCATGAAGGTGGCAGATCTAGGTTGCTCTGCGGGACCAAATACACTTCTTGTGATATCAAATATTATTGACATGGTTTATAAAGCAAGCACCCACTTGAATCATGAACCACCCACACTCCAATTTTATCTCAATGATTTATTTGGAAACGATTTCAATTCCATCTTCAAGTCACTCCCTGATTTCTGTAAAAGATTGATAGAAGATAAGGGTCATAATTTTGGTCCATGCTTTATTAACGCTACTCCTGGATCCTTCTATGGGAGGCTCTTTCCCAATAATTCCATAAACCTTTTTCATTCCTCCTACGGTCTACACTGGCTCTCTCAGGATCCATTATTGGGGTCTAGCGAGGCATCGTTACTTAACAAGGGCCATTGTTACATAGTTAACACAAGCCCTCCAGAGGTATACAAAGCTTACCTTAAGCAGTTTCAACAAGATTTTAAATTGTTTCTGAAATCACGTTCGAAGGAACTTGTGCCTGGAGGAGCAATGCTCTTGGTGTTACTTGGCAGAAATGAAATTCCTCCTACAGTAAACGGTTGGGAACCAATTAGTCTAATACTCAATGACATGTTCTTGGAGGGTTTGATTGAAGAAGCAAAATTAGACTCCTTCAACATACCAGTGTATCAACCTACAGTTGAAGAAATTAGGCATGTGATTCAGGAAGAAGGGTCATTCTATGTTCAACGATTAGAGATTTTCATCCAGCCTTTGGGTGAAAGCATAAATGACGGTGGTGATGATTCTTTTCTTGATGGAAATTTAAAAGCTGAATCAGTAGCCAAGCACATGAGAGCAATAATGGAGCCTCTTTTGTCCACAAAGTTTGGTGCAGAAGTTATAAATGAACTATTCACCAGGTTTCAAAAGAAAATTATGCAACTGATGGAGGTGGAGAAATCGGAGTGGGCTACTTTGATGATATCCATGATAAAAACTGCTTGA

>Glyma18g47370.3   sequence type=CDS   gene model=Glyma18g47370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGATATCAACTATCCCTTCACATGAATGATGGCAATAAAGAACAGAGTTATGCAAACAACTCGTCGATGCAAAGAAGAGTAATAAGTAAAACCAAAACCATACTTGAAGAAACTATAATGAGGCTGTTGTATTGTGATTCTTCTCCTAGCTGCATGAAGGTGGCAGATCTAGGTTGCTCTGCGGGACCAAATACACTTCTTGTGATATCAAATATTATTGACATGGTTTATAAAGCAAGCACCCACTTGAATCATGAACCACCCACACTCCAATTTTATCTCAATGATTTATTTGGAAACGATTTCAATTCCATCTTCAAGTCACTCCCTGATTTCTGTAAAAGATTGATAGAAGATAAGGGTCATAATTTTGGTCCATGCTTTATTAACGCTACTCCTGGATCCTTCTATGGGAGGCTCTTTCCCAATAATTCCATAAACCTTTTTCATTCCTCCTACGGTCTACACTGGCTCTCTCAGGATCCATTATTGGGGTCTAGCGAGGCATCGTTACTTAACAAGGGCCATTGTTACATAGTTAACACAAGCCCTCCAGAGGTATACAAAGCTTACCTTAAGCAGTTTCAACAAGATTTTAAATTGTTTCTGAAATCACGTTCGAAGGAACTTGTGCCTGGAGGAGCAATGCTCTTGGTGTTACTTGGCAGAAATGAAATTCCTCCTACAGTAAACGGTTGGGAACCAATTAGTCTAATACTCAATGACATGTTCTTGGAGGGTTTGATTGAAGAAGCAAAATTAGACTCCTTCAACATACCAGTGTATCAACCTACAGTTGAAGAAATTAGGCATGTGATTCAGGAAGAAGGGTCATTCTATGTTCAACGATTAGAGATTTTCATCCAGCCTTTGGGTGAAAGCATAAATGACGGTGGTGATGATTCTTTTCTTGATGGAAATTTAAAAGCTGAATCAGTAGCCAAGCACATGAGAGCAATAATGGAGCCTCTTTTGTCCACAAAGTTTGGTGCAGAAGTTATAAATGAACTATTCACCAGGTTTCAAAAGAAAATTATGCAACTGATGGAGGTGGAGAAATCGGAGTGGGCTACTTTGATGATATCCATGATAAAAACTGCTTGA

Predicted protein sequences of Glyma18g47370

Limit To All Plant Sequences

>Glyma18g47370.2   sequence type=predicted peptide   gene model=Glyma18g47370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERYQLSLHMNDGNKEQSYANNSSMQRRVISKTKTILEETIMRLLYCDSSPSCMKVADLGCSAGPNTLLVISNIIDMVYKASTHLNHEPPTLQFYLNDLFGNDFNSIFKSLPDFCKRLIEDKGHNFGPCFINATPGSFYGRLFPNNSINLFHSSYGLHWLSQDPLLGSSEASLLNKGHCYIVNTSPPEVYKAYLKQFQQDFKLFLKSRSKELVPGGAMLLVLLGRNEIPPTVNGWEPISLILNDMFLEGLIEEAKLDSFNIPVYQPTVEEIRHVIQEEGSFYVQRLEIFIQPLGESINDGGDDSFLDGNLKAESVAKHMRAIMEPLLSTKFGAEVINELFTRFQKKIMQLMEVEKSEWATLMISMIKTA*

>Glyma18g47370.3   sequence type=predicted peptide   gene model=Glyma18g47370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERYQLSLHMNDGNKEQSYANNSSMQRRVISKTKTILEETIMRLLYCDSSPSCMKVADLGCSAGPNTLLVISNIIDMVYKASTHLNHEPPTLQFYLNDLFGNDFNSIFKSLPDFCKRLIEDKGHNFGPCFINATPGSFYGRLFPNNSINLFHSSYGLHWLSQDPLLGSSEASLLNKGHCYIVNTSPPEVYKAYLKQFQQDFKLFLKSRSKELVPGGAMLLVLLGRNEIPPTVNGWEPISLILNDMFLEGLIEEAKLDSFNIPVYQPTVEEIRHVIQEEGSFYVQRLEIFIQPLGESINDGGDDSFLDGNLKAESVAKHMRAIMEPLLSTKFGAEVINELFTRFQKKIMQLMEVEKSEWATLMISMIKTA*

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