Glyma18g47330 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g47330

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57012797
stop:	57016960
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46090	AT	Annotation by Michelle Graham. TAIR10: Diacylglycerol kinase family protein \| chr2:18950919-18953079 FORWARD LENGTH=364	SoyBase	E_val: 0	ISS
GO:0006671	GO-bp	Annotation by Michelle Graham. GO Biological Process: phytosphingosine metabolic process	SoyBase	N/A	ISS
GO:0007205	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0004143	GO-mf	Annotation by Michelle Graham. GO Molecular Function: diacylglycerol kinase activity	SoyBase	N/A	ISS
GO:0017050	GO-mf	Annotation by Michelle Graham. GO Molecular Function: D-erythro-sphingosine kinase activity	SoyBase	N/A	ISS
PTHR12358	Panther	SPHINGOSINE KINASE	JGI		ISS
PTHR12358:SF4	Panther	SPHINGOSINE KINASE 2	JGI		ISS
PF00781	PFAM	Diacylglycerol kinase catalytic domain	JGI		ISS
UniRef100_G7L6P0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Diacylglycerol kinase n=1 Tax=Medicago truncatula RepID=G7L6P0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EC93	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EC93 related cluster n=1 Tax=unknown RepID=UPI000233EC93	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47330

Paralog	Evidence	Comments
Glyma09g39010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g238500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47330

Limit To All Plant Sequences

>Glyma18g47330.1   sequence type=CDS   gene model=Glyma18g47330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGGGAAGAGTAATATACGTTGCTCACACCGTATGTATCAGATCAGAGCTTCAACCCATGGCACCTGACCGCATTGGTTCTTCCTCTTCTTCTCGCCAAAGGGACCTCGTTTTCGTCGTCAACCCTCTAGGTGCTAATGGGAGGACAGGTAAAGAATGGAGGAAGTTAGTTCCATATCTACGGTCTCGTCTTGGTAAAGAGTGCAATATATGTGAATCCATAACGTCGGGTCCTTGTCATGCTATTGACATAACAAGAGAGGCTATAAGGGAGGGGGCTGATGCTGTCATTGCTGTTGGAGGAGATGGAACTCTTCATGAGGTTGTTAATGGGTTTTTCTGGGCTGGAAAACCTGTTGTTAGTCAAGTGAAAGAGTCTACACACTCAACTGCTCTTGGTCTCATCCCCTTGGGAACTGGTTCTGATTTTGCAAGAACATTTGGGTGGAAAAATGATCCCCATGAGGCCATTGAACGTGTTGCTAGAGGGTTGAGATCAATGATAGATGTCGGTGTTATCACTGGAGAGAGTTGCGACCATCATTACTTCATAAATGTCGCCGACATTCATTTGAGTGCAAAGGCGGGTTTTTATGCTTCTAGATACAAGAGATTTGGCAACCTGTGCTATGTCATTGGTGCATTGCAAGCCTTCATTGGGCATCAAAACCAGGACATGAGAATCAGGTTCAATGATGGTCCATGGGAGACATGTCCTCAAGTGACAGCCCTTTGCATTGGAAATGCAAAATACTTTGGTGGTGGCATGAAAATTACACCAAATGCTGATCCTTTCAGTAGAAATTTAGAGGTTGTAACTCTTCAGAACTTCAAGTGGTATGATTTTGTCTTGAAATTACATAAGCTATACAGTGGGACACATCTCTCAGTAAAAAATGTATCTGATAGAAGTGTACTTTCTATTGAGGTGGAGGACATATCAGGCATGGGTGGTGGTATTTATATTCAATCTGATGGGGAGCATTTGGGGTTCCTTCCAAAAAAGATTAGTGTTGTGCCTGCTGCTATTGAGATGATATTGTGA

Predicted protein sequences of Glyma18g47330

Limit To All Plant Sequences

>Glyma18g47330.1   sequence type=predicted peptide   gene model=Glyma18g47330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALGRVIYVAHTVCIRSELQPMAPDRIGSSSSSRQRDLVFVVNPLGANGRTGKEWRKLVPYLRSRLGKECNICESITSGPCHAIDITREAIREGADAVIAVGGDGTLHEVVNGFFWAGKPVVSQVKESTHSTALGLIPLGTGSDFARTFGWKNDPHEAIERVARGLRSMIDVGVITGESCDHHYFINVADIHLSAKAGFYASRYKRFGNLCYVIGALQAFIGHQNQDMRIRFNDGPWETCPQVTALCIGNAKYFGGGMKITPNADPFSRNLEVVTLQNFKWYDFVLKLHKLYSGTHLSVKNVSDRSVLSIEVEDISGMGGGIYIQSDGEHLGFLPKKISVVPAAIEMIL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain