Glyma18g47320 - SoyBase

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Report for Sequence Feature Glyma18g47320

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57007091
stop:	57012098
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61540	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr3:22773399-22775699 FORWARD LENGTH=515	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
PTHR10992	Panther	ALPHA/BETA HYDROLASE RELATED	JGI		ISS
PTHR10992:SF200	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00561	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_C6TJL4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TJL4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7L6P1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Proline iminopeptidase n=1 Tax=Medicago truncatula RepID=G7L6P1_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47320

Paralog	Evidence	Comments
Glyma09g39020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g238400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g47320

Limit To All Plant Sequences

>Glyma18g47320.3   sequence type=transcript   gene model=Glyma18g47320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGCCGTCCAAACAATTCAGTCAAAGTTAGAAAAGCCGTTCTGATTTTATCCACTCTCGCTTACCCTCACTTCGTCCCACTCGCCACACTACAATGCTGTTACTCCACGCGCCACCACCACGTTTTCTGAGAACATTGCTTCATTACAATCATAATATTCATCATTATTCTCGCGCTTTCTCTTCACTATCTCACTTCACGAAACCCTATTCTGTTTCCAACCGTTTCATCTCGCATTCTCGCTGGAGCTCTCTCCCCCCAATGAACGGAGAAGGCCTCGCCGCCGGCGACTCCTCGCCGGAGCACGTCACTGGAGACTGGTACTCCGTGCCGGATCTCCGGTTGCGCGATCATCGCTTCAAGGTCCCTCTCGATCACTGTCGGGGACTCCATTCTTCTCCCAAGATCACCGTTTTTGCACGTGAAGTCGTTGCAGTTGGGAAAGAAGAGCAAAACTTGCCATACTTATTATATTTGCAAGGTGGACCTGGGTTTGAGTGCCGGCGTCCTACTGAATCCAGTGGATGGACTAAAAAAGTTTGTGAAGAATTCCGTCTCATCTTAATGGATCAGCGAGGAACAGGCTTATCAACTCCCTTGACTGTGTCATCAATGTCACAATTCAAGTCTGCTGATGAATTAGCTGACTTTTTAAAATATTTCCGAGCTGATAATATAGTAAACGATGCAGAGTTTATTCGAGTTCGCCTTGTTCCTGATGCTGGTCCTTGGACAATATTGGGTCAGAGCTATGGTGGATTTTGTGCAGTCACGTATTTGAGTTTCGCACCAAAAGGATTGAAGCAAGTCCTTATAACTGGAGGAATTCCTCCGATTGGAGGTGGATGTACTGCAGATTCAGTGTACAAAGCAGGCTTTGAGCAAGCTATAGTTCAAAATGAGAAGTACTACAAGAGGTTCCCTCAAGATATTAAAATTGTTCAAGAACTTGTTAATTATTTGGCTGAACAAGAAGGAGGAGGGGTGGCTCTTCCATCTGGTGGCTTCCTAACCCCAAGAGGGCTGCAGACTCTTGGTCTATCTGGCTTAGGATCCAGAGCTGGTTTCGAGAGCATGCACTATTTGTTTGAGAGCGTGTGGGATCCTACTTTTGTTCCGGGAGCACCAAAGAGAATAAGTTACAACTTCCTAAGTTCTTTTGAGAAGTGGTTAAATTTTGATACCAATCCACTCTATGCTCTTCTACATGAATCCATCTATTGTCAGTTGGAGACAAGTTTGATGCAATTAGAGCTGCCAGAGAAGGACTACCTGTACTTTTTACAGGAGAGATGATTTTCCCATGGATGTTTGATGAGATTCATGCATTGAAACCATTCAAAGATGCAGCTCATATATTGGCAGAGAAGAAGGATTGGCCCCCATTATATGACGTTCAGGTTCTGAATAACAATAAGGTACCTGTTGCTGCAGCTGTTTACTATGAAGACTTGTACGTGAATTTTAAGCTGGCCATGGAAACAGCTTCTCAAATAGCAGGGATTAGGCCATGGATAACTAATGAGTTCATGCATTCTGGCTTGCGTGATGATGGGAGCAAAGTTATTGATCATTTGTTGGGGATGCTAAATGGAAGGAAACCTCTATTTTGATCACCATTACATGCATGTTTGGAAATTCGTTGAAAAATAAGAAATAAGGTCTAGGGTATAGAAGCTATAACTTTTAGTTTCTCTGTAAACGTGGAAAACTACATCTGGATTATAGAACCAAACATGTTATACATCTCTAATCTGCCTCCTTAGCCTTTGAATTGTGAACTTTTATTTTCTTCTAAGTTGGGGGAATCTTCCATTCTTCATGTTTAAATTGTAAGATTTTGCTTGTATTTCTTGAAATGTCTGTCAGGTTTGGCCTTGTTTGAATTATTCGTTTCCTAAATAAAGTTTTTGGTTCTTAAAAAAATT

Coding sequences of Glyma18g47320

Limit To All Plant Sequences

>Glyma18g47320.2   sequence type=CDS   gene model=Glyma18g47320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGTTACTCCACGCGCCACCACCACGTTTTCTGAGAACATTGCTTCATTACAATCATAATATTCATCATTATTCTCGCGCTTTCTCTTCACTATCTCACTTCACGAAACCCTATTCTGTTTCCAACCGTTTCATCTCGCATTCTCGCTGGAGCTCTCTCCCCCCAATGAACGGAGAAGGCCTCGCCGCCGGCGACTCCTCGCCGGAGCACGTCACTGGAGACTGGTACTCCGTGCCGGATCTCCGGTTGCGCGATCATCGCTTCAAGGTCCCTCTCGATCACTGTCGGGGACTCCATTCTTCTCCCAAGATCACCGTTTTTGCACGTGAAGTCGTTGCAGTTGGGAAAGAAGAGCAAAACTTGCCATACTTATTATATTTGCAAGGTGGACCTGGGTTTGAGTGCCGGCGTCCTACTGAATCCAGTGGATGGACTAAAAAAGTTTGTGAAGAATTCCGTCTCATCTTAATGGATCAGCGAGGAACAGGCTTATCAACTCCCTTGACTGTGTCATCAATGTCACAATTCAAGTCTGCTGATGAATTAGCTGACTTTTTAAAATATTTCCGAGCTGATAATATAGTAAACGATGCAGAGTTTATTCGAGTTCGCCTTGTTCCTGATGCTGGTCCTTGGACAATATTGGGTCAGAGCTATGGTGGATTTTGTGCAGTCACGTATTTGAGTTTCGCACCAAAAGGATTGAAGCAAGTCCTTATAACTGGAGGAATTCCTCCGATTGGAGGTGGATGTACTGCAGATTCAGTGTACAAAGCAGGCTTTGAGCAAGCTATAGTTCAAAATGAGAAGTACTACAAGAGGTTCCCTCAAGATATTAAAATTGTTCAAGAACTTGTTAATTATTTGGCTGAACAAGAAGGAGGAGGGGTGGCTCTTCCATCTGGTGGCTTCCTAACCCCAAGAGGGCTGCAGACTCTTGGTCTATCTGGCTTAGGATCCAGAGCTGGTTTCGAGAGCATGCACTATTTGTTTGAGAGCGTGTGGGATCCTACTTTTGTTCCGGGAGCACCAAAGAGAATAAGTTACAACTTCCTAAGTTCTTTTGAGAAGTGGTTAAATTTTGATACCAATCCACTCTATGCTCTTCTACATGAATCCATCTATTGTCAGGGTTCTGCTAATAAATGGTCTGCTAATAGTGTAAGAACTGCAGTTGGAGACAAGTTTGATGCAATTAGAGCTGCCAGAGAAGGACTACCTGTACTTTTTACAGGAGAGATGATTTTCCCATGGATGTTTGATGAGATTCATGCATTGAAACCATTCAAAGATGCAGCTCATATATTGGCAGAGAAGAAGGATTGGCCCCCATTATATGACGTTCAGGTTCTGAATAACAATAAGGTACCTGTTGCTGCAGCTGTTTACTATGAAGACTTGTACGTGAATTTTAAGCTGGCCATGGAAACAGCTTCTCAAATAGCAGGGATTAGGCCATGGATAACTAATGAGTTCATGCATTCTGGCTTGCGTGATGATGGGAGCAAAGTTATTGATCATTTGTTGGGGATGCTAAATGGAAGGAAACCTCTATTTTGA

>Glyma18g47320.3   sequence type=CDS   gene model=Glyma18g47320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGTTACTCCACGCGCCACCACCACGTTTTCTGAGAACATTGCTTCATTACAATCATAATATTCATCATTATTCTCGCGCTTTCTCTTCACTATCTCACTTCACGAAACCCTATTCTGTTTCCAACCGTTTCATCTCGCATTCTCGCTGGAGCTCTCTCCCCCCAATGAACGGAGAAGGCCTCGCCGCCGGCGACTCCTCGCCGGAGCACGTCACTGGAGACTGGTACTCCGTGCCGGATCTCCGGTTGCGCGATCATCGCTTCAAGGTCCCTCTCGATCACTGTCGGGGACTCCATTCTTCTCCCAAGATCACCGTTTTTGCACGTGAAGTCGTTGCAGTTGGGAAAGAAGAGCAAAACTTGCCATACTTATTATATTTGCAAGGTGGACCTGGGTTTGAGTGCCGGCGTCCTACTGAATCCAGTGGATGGACTAAAAAAGTTTGTGAAGAATTCCGTCTCATCTTAATGGATCAGCGAGGAACAGGCTTATCAACTCCCTTGACTGTGTCATCAATGTCACAATTCAAGTCTGCTGATGAATTAGCTGACTTTTTAAAATATTTCCGAGCTGATAATATAGTAAACGATGCAGAGTTTATTCGAGTTCGCCTTGTTCCTGATGCTGGTCCTTGGACAATATTGGGTCAGAGCTATGGTGGATTTTGTGCAGTCACGTATTTGAGTTTCGCACCAAAAGGATTGAAGCAAGTCCTTATAACTGGAGGAATTCCTCCGATTGGAGGTGGATGTACTGCAGATTCAGTGTACAAAGCAGGCTTTGAGCAAGCTATAGTTCAAAATGAGAAGTACTACAAGAGGTTCCCTCAAGATATTAAAATTGTTCAAGAACTTGTTAATTATTTGGCTGAACAAGAAGGAGGAGGGGTGGCTCTTCCATCTGGTGGCTTCCTAACCCCAAGAGGGCTGCAGACTCTTGGTCTATCTGGCTTAGGATCCAGAGCTGGTTTCGAGAGCATGCACTATTTGTTTGAGAGCGTGTGGGATCCTACTTTTGTTCCGGGAGCACCAAAGAGAATAAGTTACAACTTCCTAAGTTCTTTTGAGAAGTGGTTAAATTTTGATACCAATCCACTCTATGCTCTTCTACATGAATCCATCTATTGTCAGTTGGAGACAAGTTTGATGCAATTAGAGCTGCCAGAGAAGGACTACCTGTACTTTTTACAGGAGAGATGA

Predicted protein sequences of Glyma18g47320

Limit To All Plant Sequences

>Glyma18g47320.2   sequence type=predicted peptide   gene model=Glyma18g47320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLLHAPPPRFLRTLLHYNHNIHHYSRAFSSLSHFTKPYSVSNRFISHSRWSSLPPMNGEGLAAGDSSPEHVTGDWYSVPDLRLRDHRFKVPLDHCRGLHSSPKITVFAREVVAVGKEEQNLPYLLYLQGGPGFECRRPTESSGWTKKVCEEFRLILMDQRGTGLSTPLTVSSMSQFKSADELADFLKYFRADNIVNDAEFIRVRLVPDAGPWTILGQSYGGFCAVTYLSFAPKGLKQVLITGGIPPIGGGCTADSVYKAGFEQAIVQNEKYYKRFPQDIKIVQELVNYLAEQEGGGVALPSGGFLTPRGLQTLGLSGLGSRAGFESMHYLFESVWDPTFVPGAPKRISYNFLSSFEKWLNFDTNPLYALLHESIYCQGSANKWSANSVRTAVGDKFDAIRAAREGLPVLFTGEMIFPWMFDEIHALKPFKDAAHILAEKKDWPPLYDVQVLNNNKVPVAAAVYYEDLYVNFKLAMETASQIAGIRPWITNEFMHSGLRDDGSKVIDHLLGMLNGRKPLF*

>Glyma18g47320.3   sequence type=predicted peptide   gene model=Glyma18g47320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLLHAPPPRFLRTLLHYNHNIHHYSRAFSSLSHFTKPYSVSNRFISHSRWSSLPPMNGEGLAAGDSSPEHVTGDWYSVPDLRLRDHRFKVPLDHCRGLHSSPKITVFAREVVAVGKEEQNLPYLLYLQGGPGFECRRPTESSGWTKKVCEEFRLILMDQRGTGLSTPLTVSSMSQFKSADELADFLKYFRADNIVNDAEFIRVRLVPDAGPWTILGQSYGGFCAVTYLSFAPKGLKQVLITGGIPPIGGGCTADSVYKAGFEQAIVQNEKYYKRFPQDIKIVQELVNYLAEQEGGGVALPSGGFLTPRGLQTLGLSGLGSRAGFESMHYLFESVWDPTFVPGAPKRISYNFLSSFEKWLNFDTNPLYALLHESIYCQLETSLMQLELPEKDYLYFLQER*

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