Glyma18g47310 - SoyBase

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Report for Sequence Feature Glyma18g47310

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57000425
stop:	57004731
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46110	AT	Annotation by Michelle Graham. TAIR10: ketopantoate hydroxymethyltransferase 1 \| chr2:18954807-18956411 REVERSE LENGTH=347	SoyBase	E_val: 4.00E-116	ISS
GO:0015940	GO-bp	Annotation by Michelle Graham. GO Biological Process: pantothenate biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003864	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	SoyBase	N/A	ISS
PTHR20881	Panther	3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE	JGI		ISS
PF02548	PFAM	Ketopantoate hydroxymethyltransferase	JGI		ISS
UniRef100_G7KT22	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Medicago truncatula RepID=G7KT22_MEDTR	SoyBase	E_val: 7.00E-114	ISS
UniRef100_I1N3V2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3V2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47310

Paralog	Evidence	Comments
Glyma09g39030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g238300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47310

Limit To All Plant Sequences

>Glyma18g47310.2   sequence type=CDS   gene model=Glyma18g47310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATTTCCTAGTAGCACTTTCAAGAGCTTCTTCCACTGTAACCAACCACTGTCTGTGTCACCTCCGCAACACGTGCAACGTTGTGGCAGAGAAGTTGACGCTGACCCGACATAGACGTCTGTCATGTCGAAAATTCCGCGTCCATGCATCACCATGGACGCGACACCACCATCCTATCACCCTTGAACAAATGCTTGCTCATTGTCGTGCCGTTGCTCGTGGCGCCAAGAGGCCTCTTCTCGTTGGAGACTTGCCATTTGGAACCTATGAATCCAATTCCAGTAAGGCAGTTGATACAGTAGTTAGGATGTTAAAGGAAGGAAACATGGATGCCATAAAATTAGAAGGAGGGTCAATTTCAAGGGTTGTTGCAGCAAAAGCCATTGTTGAAGCTGGAATAGCAGTCATGGGACGTGTGGGACTTACTCCTCAGGCCATTAGTGTTTTGGGGGCATTTAGACCTCAAGGAAGAACTGTTGCTAGTGCTATCAAGGTTGTGGAGATGGCATTGGCTTTGCAGGAAGCTGGGTGCTTTTCTGTTGTTGTAGAGTGTGTGCCTGCACCTGTGGCTGCTGCTGCTACAGCAGCACTTCAGATTCCAACAATTGGAATTGGGGCTGATCCATTTTGCAGTGGGCAGGTGCTACTTTTCCACGATCTGCTTGGTATGCTGCAACATCCTCATGCTAAAGATTCTTTGGTAAAGTTAAGACTCCATCTTTTGCATACTCCAAAATTTTGTAAGCAGTATGCCTGTGTTGGAAATGTAATTAATAAAGCCTTATTAGAGTATAAGGAAGATGTGATAAATGGTTCATTTCGATTGGGTTTGGACAAGGCAGCATCTGCAGCATTTGAAGCAGTCCAAACTATGGATACTTCCAAATCAAACGGTGAAGGACAACAAAGGACTAAAACAACATTTTAG

Predicted protein sequences of Glyma18g47310

Limit To All Plant Sequences

>Glyma18g47310.2   sequence type=predicted peptide   gene model=Glyma18g47310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHFLVALSRASSTVTNHCLCHLRNTCNVVAEKLTLTRHRRLSCRKFRVHASPWTRHHHPITLEQMLAHCRAVARGAKRPLLVGDLPFGTYESNSSKAVDTVVRMLKEGNMDAIKLEGGSISRVVAAKAIVEAGIAVMGRVGLTPQAISVLGAFRPQGRTVASAIKVVEMALALQEAGCFSVVVECVPAPVAAAATAALQIPTIGIGADPFCSGQVLLFHDLLGMLQHPHAKDSLVKLRLHLLHTPKFCKQYACVGNVINKALLEYKEDVINGSFRLGLDKAASAAFEAVQTMDTSKSNGEGQQRTKTTF*

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