Glyma18g47300 - SoyBase

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Report for Sequence Feature Glyma18g47300

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56995337
stop:	56997541
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01250	AT	Annotation by Michelle Graham. TAIR10: WRKY family transcription factor \| chr4:522839-524129 REVERSE LENGTH=298	SoyBase	E_val: 1.00E-82	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_B0LUR3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Glycine max RepID=B0LUR3_SOYBN	SoyBase	E_val: 3.00E-133	ISS
UniRef100_C6T771	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T771_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma18g47300

Locus	Gene Symbol	Protein Name
	WRKY10	WRKY Transcription Factor

Expression Patterns of Glyma18g47300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47300

Paralog	Evidence	Comments
Glyma09g39040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g238200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47300

Limit To All Plant Sequences

>Glyma18g47300.1   sequence type=CDS   gene model=Glyma18g47300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAAGATTGGGATCTACATGCGGTGGTTAGAGGCTGCTCCACCGTTACATCATCCTCAGTGTCTTCTTCTTCATCTCCTTCTTCCTCTGGTTTTGCCTCTTCTTACTTCCACCCTGAAGCTGCAGTTTCTTCTTCTTCTTCTTCCTATTCTGGCTTCAACATCTTCAAGGGTGAACAAGGAATAAGCCAAGTTTTGTCGCTCTCTGCGTACCCCTTTGAGGCAAGGAGCTCCATTGAGGAATTGCATGAGCTTTGCAAACCTTTCTTCTCCAAATCTCAGCCTCTAACGTTGCAAGCCTCTTCACCTTTGTCCTCACTCTCTTCCTATTCCTCTGCGCCACCCAAATCTGTTTCAACGCAAGAGAAACAACAACAGAGGAGCAAGCAGGCACATGCTGTCACCACCCCACGATCTAAAAGAAGAAAGAACCAGCTTAAGAAAGTTTGTCAAGTGCCAGTTGAGAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGCCAGAAACCCATAAAGGGGTCTCCATATCCAAGGGGGTACTATAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAGGTTGAAAGAAACAGATCAGACCCAACAATGTTTATAGTGACTTACACTGCTGAGCACAACCACCCTGCTCCTACTCACAGAAACTCTCTTGCTGGCTCCACACGTCAGAAGCCATTGGTACCTCAAACAGCCACCACCACTGAAGAAGACTCTGACAAGAGCAAGAGCCTCACAAAACCCACTTCCCCTGCCACCTCAGGGGCAGAAGAAGAGGCTCCAACACCATCACAAGGGGAAAAGTCTGAGAGCAGAGAAGAGAAAGAGGATGTGATGGATGATGAGGAAGAAGATGAATTTGGCTTGTCTGATATGGTGCTTTCAGATGACTTCTTTGAAAGTTTGGATGAACTGAGCCAACTTACGGCTCCTTCTGTTGTCACTGGAGACTGTTTCAGTGACCCCTTTTCAGCAATTGCAATCCCTTCTTGGGTGGCTAGTGGTGCTGCTACTGCTAGTGGGTGTAGATGA

Predicted protein sequences of Glyma18g47300

Limit To All Plant Sequences

>Glyma18g47300.1   sequence type=predicted peptide   gene model=Glyma18g47300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEDWDLHAVVRGCSTVTSSSVSSSSSPSSSGFASSYFHPEAAVSSSSSSYSGFNIFKGEQGISQVLSLSAYPFEARSSIEELHELCKPFFSKSQPLTLQASSPLSSLSSYSSAPPKSVSTQEKQQQRSKQAHAVTTPRSKRRKNQLKKVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLVPQTATTTEEDSDKSKSLTKPTSPATSGAEEEAPTPSQGEKSESREEKEDVMDDEEEDEFGLSDMVLSDDFFESLDELSQLTAPSVVTGDCFSDPFSAIAIPSWVASGAATASGCR*

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