Report for Sequence Feature Glyma18g47250
Feature Type: gene_model
Chromosome: Gm18
Start: 56926057
stop: 56930296
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g47250
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G21410 AT
Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 29 | chr4:11402463-11405025 REVERSE LENGTH=679
SoyBase E_val: 0 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005773 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuole
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0004674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016301 GO-mf
Annotation by Michelle Graham. GO Molecular Function: kinase activity
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG1187
KOG
Serine/threonine protein kinase
JGI ISS
PTHR24420 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24420:SF430 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00069 PFAM
Protein kinase domain
JGI ISS
PF01657 PFAM
Domain of unknown function DUF26
JGI ISS
UniRef100_Q9XED4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase homolog RK20-1 n=1 Tax=Phaseolus vulgaris RepID=Q9XED4_PHAVU
SoyBase E_val: 0 ISS
UniRef100_UPI000233E422 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E422 related cluster n=1 Tax=unknown RepID=UPI000233E422
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g47250
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma18g47250 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g237900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g47250
Coding sequences of Glyma18g47250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g47250.1 sequence type=CDS gene model=Glyma18g47250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTACTATTTCTGGTATGCCGCTTTTCTTTCTTTGTTGCTTGTATCTAATAATAGTAATATGTGAAGCCAGCTTCGGACCAAGTTATGAATACTCCAAATACTGTAATAACAGTAATGGAAACTACACAGCCAATAGCATCTACCAAACCAACCTCAATACCCTCTTATCCACCCTCACTTCCCACACAGAAATCGACTATGGTTTCTACAATTTCTCGCATGGCCAAAACTCAGACAAAGTATACGCAATAGGGTTATGCAGAGGAGATGTTAAGCCAGACGAATGTCGCAGCTGCCTCAACAATTCTAGAGTGAGTCTCACACGGTTGTGTCCAAAGCAGTTCGAGGCAATCAAGTGGGAAGAGAAGTGCATGTTGCGCTACTCCAACCGCGCAATTTTTCACACCATGGATGCTTCTTTTTCGTATCCTATGAGCAACATAAACAATGCAACGGATGCGGAAGAGTTCAATAAAGTGTTGGGTGAGTTACTTAGAAATCTGAGTGACAAAGCTGCATCAGGTGACTCTCGGCGCAAGTATGCCGCGGATACTGCAGTCTTTGCGAATCTCCAAACCATATACGGTCTTGTGCAGTGTACGCCTGATTTGTCAAGGCAAGACTGCGGTGACTGCTTGCATTGGAGTTTGGCAGATTTCGGAAATGTTTTCAAAAACAAAGTTGGTGCTGTAGTGCTTAGACCAAGTTGTAATGTTAGATATGAAATCTACCCCTTCTACGATGAACCTACACCATCAGCATCGGTACCACTTTCCCTAAAAGAAAAGGGCAACTCACTGCGAACTACAATCGCCATAATTGTGCCTACCGTTCTCGTTGTTGTTGCTTTGCTCATTTTCATTAGCATATATTTTAGGAGGAGGAAATTAGCAAGGAAAAATCTTCTCGCTGATGAAATTGAATTGGCTGAATCATTGCAATTCAACTTGGACACAATAAAAGTTGCAACAAATAACTTCTCTGACTCTAATAAACTCGGAGAAGGTGGGTTTGGAGCTGTTTACCAGGGCAGGCTCTCTAATGGACAAGTGATTGCTGTCAAAAGGTTGTCAAGCGATTCTGGCCAAGGTGGCGTGGAATTTAAGAATGAAGTCCTTTTACTGGCCAAGCTTCAGCACCGAAATTTAGTTAGGCTACTTGGTTTTAGTTTGGAAGGGAAAGAAAAGCTACTTGTTTATGAATTTGTTCCAAATAAAAGCCTTGATTACTTCATATTTGATCCAACAAAGAAAGCACGACTGGATTGGGATAGACGATACAAAATCATTCGAGGTATTGCTCGAGGTCTTCTTTATCTTCACGAGGATTCACGATTGCGCATTATACATCGTGATCTCAAAGCAAGCAATGTTCTCTTAGATGAAGAGATGATTCCTAAAATATCAGATTTTGGTATGGCAAGACTGATTGTTGCAGGTCAAACACAAGAAAATACAAGTCGAGTTGTTGGAACCTATGGATATATGGCACCAGAATATATAATGCATGGACAATTTTCAATAAAATCAGATGTCTTCAGTTTTGGTGTACTAGTTCTTGAGATTGTAAGTGGCCAAAAAAACCATGGTATTCGTCATGGGGAGAATGTGGAAGATCTACTAAACTTTGCATGGAGAAGCTGGCAAGAGGGGACAGTTACAAATATTATAGATCCAATATTAAACAATAGTTCACAGAATGAAATGATAAGATGCACCCACATTGGTTTACTCTGTGTTCAAGAAAATCTAGCCAACAGACCAACCATGGCTAACGTTGCACTCATGCTAAATAGTTGTTCTATCACTCTCCCAGTGCCTACAAAACCTGCTTTTTTTATGGATAGTGCAACTACAAGCCTTCCAAACATGTCATGGGAAGTTAATTCAGGGACAACACGATCGAATCAGTCCACAACCAAATCAGCTCACGACTCATTAAGTGAGGCTTCAATTTCTGAGCTATACCCTCGTTAG
Predicted protein sequences of Glyma18g47250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g47250.1 sequence type=predicted peptide gene model=Glyma18g47250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSTISGMPLFFLCCLYLIIVICEASFGPSYEYSKYCNNSNGNYTANSIYQTNLNTLLSTLTSHTEIDYGFYNFSHGQNSDKVYAIGLCRGDVKPDECRSCLNNSRVSLTRLCPKQFEAIKWEEKCMLRYSNRAIFHTMDASFSYPMSNINNATDAEEFNKVLGELLRNLSDKAASGDSRRKYAADTAVFANLQTIYGLVQCTPDLSRQDCGDCLHWSLADFGNVFKNKVGAVVLRPSCNVRYEIYPFYDEPTPSASVPLSLKEKGNSLRTTIAIIVPTVLVVVALLIFISIYFRRRKLARKNLLADEIELAESLQFNLDTIKVATNNFSDSNKLGEGGFGAVYQGRLSNGQVIAVKRLSSDSGQGGVEFKNEVLLLAKLQHRNLVRLLGFSLEGKEKLLVYEFVPNKSLDYFIFDPTKKARLDWDRRYKIIRGIARGLLYLHEDSRLRIIHRDLKASNVLLDEEMIPKISDFGMARLIVAGQTQENTSRVVGTYGYMAPEYIMHGQFSIKSDVFSFGVLVLEIVSGQKNHGIRHGENVEDLLNFAWRSWQEGTVTNIIDPILNNSSQNEMIRCTHIGLLCVQENLANRPTMANVALMLNSCSITLPVPTKPAFFMDSATTSLPNMSWEVNSGTTRSNQSTTKSAHDSLSEASISELYPR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
