SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G01510 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr1:187235-189836 FORWARD LENGTH=636 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0008360 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell shape | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010091 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome branching | SoyBase | N/A | ISS |
| GO:0010482 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of epidermal cell division | SoyBase | N/A | ISS |
| GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
| GO:0031129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: inductive cell-cell signaling | SoyBase | N/A | ISS |
| GO:0042814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: monopolar cell growth | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0045604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of epidermal cell differentiation | SoyBase | N/A | ISS |
| GO:0048444 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ morphogenesis | SoyBase | N/A | ISS |
| GO:0048530 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fruit morphogenesis | SoyBase | N/A | ISS |
| GO:0051225 | GO-bp | Annotation by Michelle Graham. GO Biological Process: spindle assembly | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:2000039 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0042802 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: identical protein binding | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| GO:0048037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cofactor binding | SoyBase | N/A | ISS |
| KOG0067 | KOG | Transcription factor CtBP | JGI | ISS | |
| PTHR10996 | Panther | 2-HYDROXYACID DEHYDROGENASE | JGI | ISS | |
| PTHR10996:SF1 | Panther | GLYCERATE DEHYDROGENASE-RELATED | JGI | ISS | |
| PF02826 | PFAM | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | JGI | ISS | |
| UniRef100_G7L6N7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: C-terminal binding protein n=1 Tax=Medicago truncatula RepID=G7L6N7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E41F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E41F related cluster n=1 Tax=unknown RepID=UPI000233E41F | SoyBase | E_val: 0 | ISS |
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Glyma18g47240 not represented in the dataset |
Glyma18g47240 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g39090 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g237800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g47240.1 sequence type=CDS gene model=Glyma18g47240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTCACCGTAACAACCCTGCACCTCTCCCCCTCGTCGTGACCCTAAACTGCGTCGAGGACTGCTCCCTCGAATTCGAATCCCTAGCTGGCGTCGCCACCGTCCAGCATGTTCCCCTCAGCTGCCTATCCGATGGCAAGATCGAGTCCGCCGCCGCCGTGCTCCTCCACTCCCTCGCCTACCTCCCTCGCGCCGCCCAGCGCCGCCTCCGCCCCTACCACCTCATCCTCTGCCTCGGCTCCGCCGACCGCGCCGTCGACTCCGCCCTCGCCGCCGACCTCGGCCTCCGCCTCGTCCACGTTGACACCTCGCGCGCCGAGGAGATCGCGGACTCTGTCATGGCGCTCTTCCTCGGCCTCCTCCGCCGCACGCACCTCCTCTCCCGCCACCCGCTCTCCGCCTCCGGCTGGCTCGGCTCCGTCCAGCCGCTCTGCCGCGGCATGCGCCGCTGTCGCGGCCTCGTTCTCGGCATCGTCGGAATCTCCGCTTCCGCTAGGTCTTTGGCCACTCGCAGCTTGGCCTTCAAAATGAGCGTGCTCTATTTCGATGCTCGCGCGGGAAAAGGAAAAGTAAAGTTCCCTCCTGCAGCACGAAGAATGGATACTCTTAATGATTTATTAGCTGCAAGTGACCTTATATCACTCCATTGTGCTTTAACAAATGAAACAATGCAGATTATTAATGCTGAATGTCTTCAACATGTGAAGCCTGGAGCTTTTATTGTAAATACGGGCAGTAGTCAACTTTTGGATGATTGTGCTGTAAAGCAGCTCTTGATTGATGGAACCTTAGCTGGATGTGCTTTGGATGGGGCAGAAGGGCCTCAATGGATGGAAGCATGGGTGAAGGAGATGCCTAACGTATTGATACTTCCCCAAAGTGCAGATTACAGTGAAGAGGTTTGGATGGAAATAAGGGAGAAAGCTATATCTATACTACAAACATTCTTCATTGATGGAATTATACCAAAGAATGCCATTTCAGATGTGGAAGAAGAGAGTGAGGTTGACAATGAAAGTGAACTATCTGATCAGCAATACAACGAAAATGCTCTCCAGATTATTGTTAGAGAGCAAACAGATGATGTTCATGTAAGTCCTGACAATTTCCAAAAGAAAGTAAGTACTCAAATGAAAGAGTCTTCGTCCCAGCATCAGGTTTCAAGTTTGTCTCAGAGTACCTCTGCCAGATCTGAAGGAAGGCGCAGCAGGTCGGGTAAAAAGGCCAAAAAAAGGCATACCCGTCAGAAGTCCCAACAAAAACCTGAAGATCCTTCTGCACCGGAGAAAGAAGGCACGTCTCGGAGAGATGATACTGCTATGAGTGGCACTGACCAAGCTTTGAGCTCTAGCTCTGAAGATTCACGAAGTAGAAAAACTCCAATAGAATCTATGCAAGAACCCACTGGTGCTCAATTCATAAAGTCAACTGTGAGACTTAGTGGAAACTGTACTGAACTATTGAAAGATGGATATATTATAGCTCTGTTTGCAAGAGACCGCTCTGCACTTCATGTCTCTAGGCAAAGAGTTAAAGGTGGAGGTTGGATCATGGATTCCATGTCAAATGTGTCAAAAAGAGACCCTGCTGCGCAGTTCCTCATCATCTTCAGAAGCAAGGACACAATTGGATTGCGATCCCTTGCTGCTGGTGGAAAATTGTTGCAGATCAATAGAAGAATGGAGTTTGTATTTGCTAGTCATAGTTTTGATGTTTGGGAGAACTGGACTCTAGAAGGTTCCTTACAGGAATGCAGACTGGTGAACTGTAGAAACCCATCAGCTGTTTTGGATGTACGCGTTGAGATTTTGGCCACTGTAGGCGAAGATGGCGTTACTCGTTGGCTTGAATAG
>Glyma18g47240.1 sequence type=predicted peptide gene model=Glyma18g47240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPHRNNPAPLPLVVTLNCVEDCSLEFESLAGVATVQHVPLSCLSDGKIESAAAVLLHSLAYLPRAAQRRLRPYHLILCLGSADRAVDSALAADLGLRLVHVDTSRAEEIADSVMALFLGLLRRTHLLSRHPLSASGWLGSVQPLCRGMRRCRGLVLGIVGISASARSLATRSLAFKMSVLYFDARAGKGKVKFPPAARRMDTLNDLLAASDLISLHCALTNETMQIINAECLQHVKPGAFIVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLILPQSADYSEEVWMEIREKAISILQTFFIDGIIPKNAISDVEEESEVDNESELSDQQYNENALQIIVREQTDDVHVSPDNFQKKVSTQMKESSSQHQVSSLSQSTSARSEGRRSRSGKKAKKRHTRQKSQQKPEDPSAPEKEGTSRRDDTAMSGTDQALSSSSEDSRSRKTPIESMQEPTGAQFIKSTVRLSGNCTELLKDGYIIALFARDRSALHVSRQRVKGGGWIMDSMSNVSKRDPAAQFLIIFRSKDTIGLRSLAAGGKLLQINRRMEFVFASHSFDVWENWTLEGSLQECRLVNCRNPSAVLDVRVEILATVGEDGVTRWLE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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