Glyma18g47200 - SoyBase

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Report for Sequence Feature Glyma18g47200

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56885409
stop:	56888702
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01310	AT	Annotation by Michelle Graham. TAIR10: Ribosomal L5P family protein \| chr4:544166-545480 REVERSE LENGTH=262	SoyBase	E_val: 1.00E-133	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG0398	KOG	Mitochondrial/chloroplast ribosomal protein L5/L7	JGI		ISS
PTHR11994	Panther	60S RIBOSOMAL PROTEIN L11-RELATED	JGI		ISS
PTHR11994:SF4	Panther	50S RIBOSOMAL PROTEIN L5	JGI		ISS
PF00281	PFAM	Ribosomal protein L5	JGI		ISS
PF00673	PFAM	ribosomal L5P family C-terminus	JGI		ISS
UniRef100_G7L6M1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L5 n=1 Tax=Medicago truncatula RepID=G7L6M1_MEDTR	SoyBase	E_val: 6.00E-149	ISS
UniRef100_I1N3U5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N3U5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47200

Paralog	Evidence	Comments
Glyma09g39130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g237400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47200

Limit To All Plant Sequences

>Glyma18g47200.1   sequence type=CDS   gene model=Glyma18g47200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCGCTCCTTCGCTTCTACACTCATCTGGGTCCTCTTTTTTCTCTCAATTTCGTGCCTTTCAATTCTCTTCTTCTTCGCTGTTTCCTCATGGAAACAGGCATGGGAATGCCGTGGTCTCTGTGAAGGCCTCTGCTTCTGGGGTTGTGTTGGTGGAGAAGTCTGAGGCAGAGAAGGCCAATAGGCTCAAAACAGCTTACACTGAGAAAATTATTCCCTTGCTCATGGAAGAGTTCTCTTACACCAACAAACACCAGGTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATTGGAGATGCTGCGCAAAATGCAAAGGGTTTGGACGCGGCAATAAGTGATCTAGCACTGATCACAGGGCAGAGACCTATTAAGACTCGGGCCAGGGCTTCTCTTGCCACTTTTAAGATCAGGGAAGGTCAACCGCTTGGGATTGCTGTGACACTAAGAGGAAATATGATGTATTCATTCCTAGACCGAGTTATCAACCTGGGACTTCCTAGGACAAGAGATTTCCAAGGTGTGAACCCCAACAGCTTTGATGGGCATGGGAACTACAGCATTGGCATTAAGGACCAGGGTGTGTTCCCAGAGATCAGAGCCGATGTTGTTGGTAAGCCTCGGGGAATGGATATCTGCATCGTGACGACGGCTAATACCGACCAAGAAGCACAGAAATTGTTAGCTCTTATGGGTATGCCCTTCAGAGAGGGAAGTGGTCCTGCCACGACAATTCGGAAAAAGAAGCTTAAGTCTCATCATTTTGATGCAAAATCAAAGGGAAGAGGAAGGAGGTGA

Predicted protein sequences of Glyma18g47200

Limit To All Plant Sequences

>Glyma18g47200.1   sequence type=predicted peptide   gene model=Glyma18g47200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATAPSLLHSSGSSFFSQFRAFQFSSSSLFPHGNRHGNAVVSVKASASGVVLVEKSEAEKANRLKTAYTEKIIPLLMEEFSYTNKHQVPKIEKIVVNCGIGDAAQNAKGLDAAISDLALITGQRPIKTRARASLATFKIREGQPLGIAVTLRGNMMYSFLDRVINLGLPRTRDFQGVNPNSFDGHGNYSIGIKDQGVFPEIRADVVGKPRGMDICIVTTANTDQEAQKLLALMGMPFREGSGPATTIRKKKLKSHHFDAKSKGRGRR*

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