Glyma18g47190 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g47190

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56876259
stop:	56884371
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01320	AT	Annotation by Michelle Graham. TAIR10: Peptidase family M48 family protein \| chr4:545905-549002 FORWARD LENGTH=424	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0080120	GO-bp	Annotation by Michelle Graham. GO Biological Process: CAAX-box protein maturation	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0004175	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity	SoyBase	N/A	ISS
GO:0004222	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity	SoyBase	N/A	ISS
KOG2719	KOG	Metalloprotease	JGI		ISS
PTHR10120	Panther	CAAX PRENYL PROTEASE STE24	JGI		ISS
PF01435	PFAM	Peptidase family M48	JGI		ISS
UniRef100_G7L6L7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CAAX prenyl protease-like protein n=1 Tax=Medicago truncatula RepID=G7L6L7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E41D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E41D related cluster n=1 Tax=unknown RepID=UPI000233E41D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47190

Paralog	Evidence	Comments
Glyma09g39150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g237300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g47190

Limit To All Plant Sequences

>Glyma18g47190.2   sequence type=transcript   gene model=Glyma18g47190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACTAATTCCAAGAGTAATTTCTCTGTCACCGAATTGATAATTACATTTTTAAAAAAAATAGTAACAAAAATATTTCCAAAATTAACATAACACCCAAAATTTTGAGTTGCGTCCCAAACATTGGGACCTAAAGGGGTTTAAACAAATCCAATCTCTCAATATAAAACCCAATGATCTCACTCTGTTTCTGATTTCTCAGTTCTCACTCGTTGTTTGTCCTTCGGTTCATCAGCGTGTGTCTCAGCCATGGCGTTTCCCTACATGGAAGCCGTTGTCGGGTTTATGATATTAATGTACATATTTGAAACTTACTTGGATGTGCGGCAACATAGTGCCCTCAAACTTCCTACTCTTCCAAAGACTTTAGAAGGAGTTATCAGCCAAGAGAAATTTGAGAAATCTAGAGCCTATAGTCTTGATAAAAGCCACTTCCATTTTGTTCACGAGTTTGTGACAATAGTGATAGACTCTACAATTTTGTACTTCGGAGTATTGCCCTGGTTTTGGAAGATATCAGGAGATTTTATGACAATAGCCAGTCTCAATGCTGAGAATGAAATACTGCATACCCTTGCCTTTTTAGCTGGGGTGATGATTTGGTCACAGATAACTGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAACAAGCAAACACCATGGTTATTCTTTAGGGACATGATTAAAGGAATTTTCCTTTCTGTAATAATTGGTCCACCTATAGTGGCTGCAATAATTGTAATAGTACAGAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGCTTTTACATTTGGTCTTTCTATTGTGATGATGACCCTTTATCCAGTACTAATAGCTCCACTCTTCAATAAGTTTACTCCACTTCCAGATGGTCAACTCAGGGAGAAAATTGAGAAACTTGCTTCCTCCCTCAACTATCCGTTAAAGAAACTATTTGTTGTCGATGGATCCACAAGATCAAGTCACAGCAATGCCTATATGTATGGATTCTTCAAGAACAAGAGGATTGTGCTTTATGACACATTAATTCAACAGTGCAAAGACGATGAGGAGATTGTTGCTGTTATTGCCCATGAGTTGGGACACTGGAAGCTCAACCATACTGTGTACACGTTTGTTGCTATGCAGATTCTTACACTTCTACAATTTGGAGGATATACACTGGTGCGAAATTCAACTGATCTGTATCGAAGCTTTGGGTTTGATACCCAGCCAGTCCTCATTGGGCTCATCATATTTCAGCATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTTGTCAGCCGATCATTTGAATTTCAGGCTGATGGCTTTGCTAAGAAGCTTGGATATGCATCTGGACTACGCGGTGGTCTTGTGAAACTACAGGAGGAGAATCTTTCAGCTATGAATACAGATCCTTGGTACTCTGCTTATCACTATTCTCATCCTCCCCTTGTTGAAAGATTGGCCGCGCTGGACGAACCGGATAAGAAAGAAGACTAAGCAAGCAACTTAAAGATGAAGAGCAGCTAAAATTGGTTGTACCCTAATTTGCTATGATTGAGTGCTGCAATAGCTGTAATATCTCAAAAGGTGACATGTTTATGTAGCTTAGGTTTCAGTGATCATGTTTTGGTCCAGGAAGATTAGATTACAAGAGTGAAGGGAAATAGGGACAAAGCAAAAACATAGTTTTACGTATCTCTAGATGGCATTTTATAACTCTTGTGCATAATGTTTTATTACTCTGCTTTGGTTTATGTCCCACTTTTGTTTTTGTTGATTATCTTTCTTTCATACTACATTTAAAAATGTTGCTTTTGGCGAAGGTAATAGATTAAGAGTAAAATACATTCTCTTTCACGTCATGAATGAATG

Coding sequences of Glyma18g47190

Limit To All Plant Sequences

>Glyma18g47190.1   sequence type=CDS   gene model=Glyma18g47190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTTCCCTACATGGAAGCCGTTGTCGGGTTTATGATATTAATGTACATATTTGAAACTTACTTGGATGTGCGGCAACATAGTGCCCTCAAACTTCCTACTCTTCCAAAGACTTTAGAAGGAGTTATCAGCCAAGAGAAATTTGAGAAATCTAGAGCCTATAGTCTTGATAAAAGCCACTTCCATTTTGTTCACGAGTTTGTGACAATAGTGATAGACTCTACAATTTTGTACTTCGGAGTATTGCCCTGGTTTTGGAAGATATCAGGAGATTTTATGACAATAGCCAGTCTCAATGCTGAGAATGAAATACTGCATACCCTTGCCTTTTTAGCTGGGGTGATGATTTGGTCACAGATAACTGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAACAAGAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGCTTTTACATTTGGTCTTTCTATTGTGATGATGACCCTTTATCCAGTACTAATAGCTCCACTCTTCAATAAGTTTACTCCACTTCCAGATGGTCAACTCAGGGAGAAAATTGAGAAACTTGCTTCCTCCCTCAACTATCCGTTAAAGAAACTATTTGTTGTCGATGGATCCACAAGATCAAGTCACAGCAATGCCTATATGTATGGATTCTTCAAGAACAAGAGGATTGTGCTTTATGACACATTAATTCAACAGTGCAAAGACGATGAGGAGATTGTTGCTGTTATTGCCCATGAGTTGGGACACTGGAAGCTCAACCATACTGTGTACACGTTTGTTGCTATGCAGATTCTTACACTTCTACAATTTGGAGGATATACACTGGTGCGAAATTCAACTGATCTGTATCGAAGCTTTGGGTTTGATACCCAGCCAGTCCTCATTGGGCTCATCATATTTCAGCATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTTGTCAGCCGATCATTTGAATTTCAGGCTGATGGCTTTGCTAAGAAGCTTGGATATGCATCTGGACTACGCGGTGGTCTTGTGAAACTACAGGAGGAGAATCTTTCAGCTATGAATACAGATCCTTGGTACTCTGCTTATCACTATTCTCATCCTCCCCTTGTTGAAAGATTGGCCGCGCTGGACGAACCGGATAAGAAAGAAGACTAA

>Glyma18g47190.2   sequence type=CDS   gene model=Glyma18g47190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTTCCCTACATGGAAGCCGTTGTCGGGTTTATGATATTAATGTACATATTTGAAACTTACTTGGATGTGCGGCAACATAGTGCCCTCAAACTTCCTACTCTTCCAAAGACTTTAGAAGGAGTTATCAGCCAAGAGAAATTTGAGAAATCTAGAGCCTATAGTCTTGATAAAAGCCACTTCCATTTTGTTCACGAGTTTGTGACAATAGTGATAGACTCTACAATTTTGTACTTCGGAGTATTGCCCTGGTTTTGGAAGATATCAGGAGATTTTATGACAATAGCCAGTCTCAATGCTGAGAATGAAATACTGCATACCCTTGCCTTTTTAGCTGGGGTGATGATTTGGTCACAGATAACTGATTTGCCCTTTTCTCTGTACTCAACTTTTGTGATTGAGGCCCGTCATGGTTTTAACAAGCAAACACCATGGTTATTCTTTAGGGACATGATTAAAGGAATTTTCCTTTCTGTAATAATTGGTCCACCTATAGTGGCTGCAATAATTGTAATAGTACAGAAAGGAGGTCCATACTTGGCCATCTATCTTTGGGCTTTTACATTTGGTCTTTCTATTGTGATGATGACCCTTTATCCAGTACTAATAGCTCCACTCTTCAATAAGTTTACTCCACTTCCAGATGGTCAACTCAGGGAGAAAATTGAGAAACTTGCTTCCTCCCTCAACTATCCGTTAAAGAAACTATTTGTTGTCGATGGATCCACAAGATCAAGTCACAGCAATGCCTATATGTATGGATTCTTCAAGAACAAGAGGATTGTGCTTTATGACACATTAATTCAACAGTGCAAAGACGATGAGGAGATTGTTGCTGTTATTGCCCATGAGTTGGGACACTGGAAGCTCAACCATACTGTGTACACGTTTGTTGCTATGCAGATTCTTACACTTCTACAATTTGGAGGATATACACTGGTGCGAAATTCAACTGATCTGTATCGAAGCTTTGGGTTTGATACCCAGCCAGTCCTCATTGGGCTCATCATATTTCAGCATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTTGTCAGCCGATCATTTGAATTTCAGGCTGATGGCTTTGCTAAGAAGCTTGGATATGCATCTGGACTACGCGGTGGTCTTGTGAAACTACAGGAGGAGAATCTTTCAGCTATGAATACAGATCCTTGGTACTCTGCTTATCACTATTCTCATCCTCCCCTTGTTGAAAGATTGGCCGCGCTGGACGAACCGGATAAGAAAGAAGACTAA

Predicted protein sequences of Glyma18g47190

Limit To All Plant Sequences

>Glyma18g47190.1   sequence type=predicted peptide   gene model=Glyma18g47190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFPYMEAVVGFMILMYIFETYLDVRQHSALKLPTLPKTLEGVISQEKFEKSRAYSLDKSHFHFVHEFVTIVIDSTILYFGVLPWFWKISGDFMTIASLNAENEILHTLAFLAGVMIWSQITDLPFSLYSTFVIEARHGFNKKGGPYLAIYLWAFTFGLSIVMMTLYPVLIAPLFNKFTPLPDGQLREKIEKLASSLNYPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKDDEEIVAVIAHELGHWKLNHTVYTFVAMQILTLLQFGGYTLVRNSTDLYRSFGFDTQPVLIGLIIFQHTVIPLQQLVSFGLNLVSRSFEFQADGFAKKLGYASGLRGGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAALDEPDKKED*

>Glyma18g47190.2   sequence type=predicted peptide   gene model=Glyma18g47190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFPYMEAVVGFMILMYIFETYLDVRQHSALKLPTLPKTLEGVISQEKFEKSRAYSLDKSHFHFVHEFVTIVIDSTILYFGVLPWFWKISGDFMTIASLNAENEILHTLAFLAGVMIWSQITDLPFSLYSTFVIEARHGFNKQTPWLFFRDMIKGIFLSVIIGPPIVAAIIVIVQKGGPYLAIYLWAFTFGLSIVMMTLYPVLIAPLFNKFTPLPDGQLREKIEKLASSLNYPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCKDDEEIVAVIAHELGHWKLNHTVYTFVAMQILTLLQFGGYTLVRNSTDLYRSFGFDTQPVLIGLIIFQHTVIPLQQLVSFGLNLVSRSFEFQADGFAKKLGYASGLRGGLVKLQEENLSAMNTDPWYSAYHYSHPPLVERLAALDEPDKKED*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain