SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G25570 | AT | Annotation by Michelle Graham. TAIR10: binding | chr2:10885881-10887842 REVERSE LENGTH=288 | SoyBase | E_val: 5.00E-129 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| PTHR11102 | Panther | SEL-1-LIKE PROTEINS | JGI | ISS | |
| PF08238 | PFAM | Sel1 repeat | JGI | ISS | |
| UniRef100_D7LL59 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LL59_ARALL | SoyBase | E_val: 9.00E-127 | ISS |
| UniRef100_UPI000233E41C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E41C related cluster n=1 Tax=unknown RepID=UPI000233E41C | SoyBase | E_val: 0 | ISS |
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Glyma18g47180 not represented in the dataset |
Glyma18g47180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g237200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g47180.2 sequence type=transcript gene model=Glyma18g47180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAGAGAAATGGGGAGTCGGGGGCGGGGTGGGGTAAACAAAACCCGACCCGACCCGACCCTTCCCGTTGCCATGCCTAGTTTTCCCCTCTCCTTTCTTCTCCCCCTCCCCTCCACTAGAAAGGCATTTGATTAACCCGTCAACCCATTCGAACCCACCCGTTTTGGACATCTTGACCGGTTGGAAAAAACTGCACACCGCGCATCCCCTTTCTTCACTTCTTCATGCTTCGACTCTTCTGCGCCTTACCTCCGCCGTCGTCTGAGTCGCGCCGCCGTGACGCCGATTGGCTTCGCCGGATTTCTCCTATGTTCGCCTGACGAGACAGAGTGAATCCTGAATCGCACTTCGAACGTGTTCTCTTCGACATCTTCACTTAAGCCTTCGATTTGTATAAGATGCTTCCGAGGGCATTATTGGCCAAATTCGTTCTCAAACCCTCCACTGTTGTTTCTCCATTCCAGTTCAATCAGCAGAGAGCATTGCATAGTAGGAACAAGAAAGCCTTGGAGTTCATTGCAAAAGGCTGGAATGCTTTGAAGGAGGTTGATAGAGTCATCGATTATTCCGATCCCAAGCATTCGGGCATTGTTTCTCTTCTCAGGACAGCTAAGGAGAATTTCGAGCTTGCTTTGGAAGCTGATAATACCAATACCCATGCTAGGTATTGGTTGTCCAGATTGCATATGAAATACCCTGTTCCAGGAGCTAATAAAGCTGTAGGGGCAGCATTATTGGTAGAAGCAGCAGAAATGGGTGATCCTGAGGCACAGTATGCATTGGGTTGTCATCTAAGAGTTGAGAATGACTATGTCCAGTCTGATCAACAAGCTTTTTATTATTTGGAGAAAGCTGTGGACCAGTTGCATCCAGGTGCTCTTTACCTTTTGGGTGCTGTATATTTGACAGGCGACTGTGTCAAGAAAGATATTGCTTCTGCATTGTGGTGTTTCCACAGAGCATCGGAAAAGGGCCATGCTGGGGCTGCTATAGCATATGGATCTCTTCTTCTTAAAGGTGTTGAGGTTCCAGAATCGGTAATAAAGTTCAGTTTGACGAGAGGTGCTGCAGCTCATAGACGGGGGAGGAATAAGGGAGCTCTTGCAATTGATCCAGTAGAGATGGCAAGAGAAAAGTTTCAGATAGCGGCAAAAGCAGGGTGTGAGCTTGGATTCAAATGGCTTGCAAGGTTAGAGGAGGAAGAGAAACGGGCACTCACGGAGGAACATTGAGATGAAATTGAGAAGTGTAGTGTGCTTTTTTTCTCTCTTTTTTTTTTTTTTTTTGTAGCAGAATGCGATCTGAATTATATGATTTAGCTTGTCTGAATTGTTGATTTTAATCATTGGTGAAAAACAATAAATAAAAAATTAAAAGATTAAAAATATAAATAAAAAATTTAATAATTAAAAAAATTTTAAAAA
>Glyma18g47180.1 sequence type=CDS gene model=Glyma18g47180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCCGAGGGCATTATTGGCCAAATTCGTTCTCAAACCCTCCACTGTTGTTTCTCCATTCCAGTTCAATCAGCAGAGAGCATTGCATAGTAGGAACAAGAAAGCCTTGGAGTTCATTGCAAAAGGCTGGAATGCTTTGAAGGAGGTTGATAGAGTCATCGATTATTCCGATCCCAAGCATTCGGGCATTGTTTCTCTTCTCAGGACAGCTAAGGAGAATTTCGAGCTTGCTTTGGAAGCTGATAATACCAATACCCATGCTAGGTATTGGTTGTCCAGATTGCATATGAAATACCCTGTTCCAGGAGCTAATAAAGCTGTAGGGGCAGCATTATTGGTAGAAGCAGCAGAAATGGGTGATCCTGAGGCACAGTATGCATTGGGTTGTCATCTAAGAGTTGAGAATGACTATGTCCAGTCTGATCAACAAGCTTTTTATTATTTGGAGAAAGCTGTGGACCAGTTGCATCCAGGTGCTCTTTACCTTTTGGGTGCTGTATATTTGACAGGCGACTGTGTCAAGAAAGATATTGCTTCTGCATTGTGGTGTTTCCACAGAGCATCGGAAAAGGGCCATGCTGGGGCTGCTATAGCATATGGATCTCTTCTTCTTAAAGGTGTTGAGGTTCCAGAATCGGTAATAAAGTTCAGTTTGACGAGAGGTGCTGCAGCTCATAGACGGGGGAGGAATAAGGGAGCTCTTGCAATTGATCCAGTAGAGATGGCAAGAGAAAAGTTTCAGATAGCGGCAAAAGCAGGGTGTGAGCTTGGATTCAAATGGCTTGCAAGGTTAGAGGAGGAAGAGAAACGGGCACTCACGGAGGAACATTGA >Glyma18g47180.2 sequence type=CDS gene model=Glyma18g47180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCCGAGGGCATTATTGGCCAAATTCGTTCTCAAACCCTCCACTGTTGTTTCTCCATTCCAGTTCAATCAGCAGAGAGCATTGCATAGTAGGAACAAGAAAGCCTTGGAGTTCATTGCAAAAGGCTGGAATGCTTTGAAGGAGGTTGATAGAGTCATCGATTATTCCGATCCCAAGCATTCGGGCATTGTTTCTCTTCTCAGGACAGCTAAGGAGAATTTCGAGCTTGCTTTGGAAGCTGATAATACCAATACCCATGCTAGGTATTGGTTGTCCAGATTGCATATGAAATACCCTGTTCCAGGAGCTAATAAAGCTGTAGGGGCAGCATTATTGGTAGAAGCAGCAGAAATGGGTGATCCTGAGGCACAGTATGCATTGGGTTGTCATCTAAGAGTTGAGAATGACTATGTCCAGTCTGATCAACAAGCTTTTTATTATTTGGAGAAAGCTGTGGACCAGTTGCATCCAGGTGCTCTTTACCTTTTGGGTGCTGTATATTTGACAGGCGACTGTGTCAAGAAAGATATTGCTTCTGCATTGTGGTGTTTCCACAGAGCATCGGAAAAGGGCCATGCTGGGGCTGCTATAGCATATGGATCTCTTCTTCTTAAAGGTGTTGAGGTTCCAGAATCGGTAATAAAGTTCAGTTTGACGAGAGGTGCTGCAGCTCATAGACGGGGGAGGAATAAGGGAGCTCTTGCAATTGATCCAGTAGAGATGGCAAGAGAAAAGTTTCAGATAGCGGCAAAAGCAGGGTGTGAGCTTGGATTCAAATGGCTTGCAAGGTTAGAGGAGGAAGAGAAACGGGCACTCACGGAGGAACATTGA
>Glyma18g47180.1 sequence type=predicted peptide gene model=Glyma18g47180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLPRALLAKFVLKPSTVVSPFQFNQQRALHSRNKKALEFIAKGWNALKEVDRVIDYSDPKHSGIVSLLRTAKENFELALEADNTNTHARYWLSRLHMKYPVPGANKAVGAALLVEAAEMGDPEAQYALGCHLRVENDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLKGVEVPESVIKFSLTRGAAAHRRGRNKGALAIDPVEMAREKFQIAAKAGCELGFKWLARLEEEEKRALTEEH* >Glyma18g47180.2 sequence type=predicted peptide gene model=Glyma18g47180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLPRALLAKFVLKPSTVVSPFQFNQQRALHSRNKKALEFIAKGWNALKEVDRVIDYSDPKHSGIVSLLRTAKENFELALEADNTNTHARYWLSRLHMKYPVPGANKAVGAALLVEAAEMGDPEAQYALGCHLRVENDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDIASALWCFHRASEKGHAGAAIAYGSLLLKGVEVPESVIKFSLTRGAAAHRRGRNKGALAIDPVEMAREKFQIAAKAGCELGFKWLARLEEEEKRALTEEH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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