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Report for Sequence Feature Glyma18g47160

Feature Type:gene_model
Chromosome:Gm18
Start:56840405
stop:56844816
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g47160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46080AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18948317-18949360 REVERSE LENGTH=347 SoyBaseE_val: 2.00E-148ISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
PF05633PFAM Protein of unknown function (DUF793) JGI ISS
UniRef100_G7L6L1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein BPS1 n=1 Tax=Medicago truncatula RepID=G7L6L1_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N3U1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3U1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g47160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47160
ParalogEvidenceComments
Glyma09g39170 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g237000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g47160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g47160
>Glyma18g47160.1   sequence type=CDS   gene model=Glyma18g47160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCCGGGCACAGGATGCAAACCGATCATTCTTCCCTTTTGGAAATCCTTTTAGGATGATATCACCGAAAGGCCCAAAAATTTCTTCACAGCTGTTGTTAATATTACATGCTTTTGAAGCAACTTTGGAAGAGAGGCTGAAAAAGCTTATTCCCAAGAGCAAGGATGAGATCCTCAGCTTGTCTTGGATGACTTTGGCCATGCAGGCACTTTGTGAGAGTCATAATGACATTAAAACCCTCATAACAGAGCTTGAGCTTCCTGTACATGATTGGGATGAGAAATGGATAGATGTGTACTTGGACATTAGTGTGAAGTTACTAGATATATGCATTGCATTTAGCTCTGAATTATCACGCCTGAACCAGGGTCATCTTTTACTTCATTGTGCATTGCACAATTTAGGTTCTTCCTCTTCAGAGCAGTATGTTCGGGCATGCTCTTCACTTGATGGTTGGAAACAGCATATTGGTTCTGGAAACCCTAGGATTGAGAAATGTGGCAGCATTTTGGATAATCTTCTGCGGTCACTTGATCTGCCAAAGGTTAAAAAGTCTGCTAAAGGGAAGGTTTTGATGCAAGCTATGTATGGAGTAAAGGTGCAGACAGTATTTTTATGCAGTGTGTTTGCTGCGGCTTTTTCGGGCTCTACAAAGAATATGTCAGATTTGGATGTGGCTGATGTATATTCTTGGGCTCCAACCTTTAAAAGTTTGCAAGATCTTGTAAATGGGGAAATTAGAGTTAGAAGTGGGCGATTTACTATATTGAATGAGTTGGAAGTAGTTGATTCCTCTGTGAAGGAATTATATCCTATTATCCAGGGCGTCTCAGATGCCATTGAGACAGAATCACTTGCGAAGATTGTTGGGGAATTAGGCAGAGCAACAGAGAAGCTTTCACAAGGACTAGATCTTCTTACAAAGGAAGTCGATAGCTTTTTCCAAGTGGTCTTGACTGGTCGTGATGCCTTGCTATCTAGTTTGAGGTCAGGTGCAACTTTCATTGACAGCATTCAGGCGGGTAACAGAGATGCACAAATAGTCAATTGA
Predicted protein sequences of Glyma18g47160
>Glyma18g47160.1   sequence type=predicted peptide   gene model=Glyma18g47160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRAQDANRSFFPFGNPFRMISPKGPKISSQLLLILHAFEATLEERLKKLIPKSKDEILSLSWMTLAMQALCESHNDIKTLITELELPVHDWDEKWIDVYLDISVKLLDICIAFSSELSRLNQGHLLLHCALHNLGSSSSEQYVRACSSLDGWKQHIGSGNPRIEKCGSILDNLLRSLDLPKVKKSAKGKVLMQAMYGVKVQTVFLCSVFAAAFSGSTKNMSDLDVADVYSWAPTFKSLQDLVNGEIRVRSGRFTILNELEVVDSSVKELYPIIQGVSDAIETESLAKIVGELGRATEKLSQGLDLLTKEVDSFFQVVLTGRDALLSSLRSGATFIDSIQAGNRDAQIVN*






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