Glyma18g47130 - SoyBase

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Report for Sequence Feature Glyma18g47130

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56828533
stop:	56832231
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61490	AT	Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein \| chr3:22758439-22760137 FORWARD LENGTH=476	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0004650	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity	SoyBase	N/A	ISS
PF00295	PFAM	Glycosyl hydrolases family 28	JGI		ISS
UniRef100_G7L6K9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase n=1 Tax=Medicago truncatula RepID=G7L6K9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000189D972	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000189D972 related cluster n=1 Tax=unknown RepID=UPI000189D972	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47130

Paralog	Evidence	Comments
Glyma09g39200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g236700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47130

Limit To All Plant Sequences

>Glyma18g47130.1   sequence type=CDS   gene model=Glyma18g47130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCTCTTGTGGAAAACTCACACGAGGATACACGTGATTAGAACATTTTTTGCAATCCTTTTGGTTGCACTGCTGAGTTCAGAGAGAGTAGAGAGCAGAAAAGCCAAAGTTGTGACCACTTCCTTGGAGTACAATGCTATAAACTGCAGAGCTCACAGTGCTGCATTGACAGATTTTGGTGGTGTTGGGGATGGAAAAACATCCAACACAAAGGCATTTCAGTCTGCAATAAGTCACCTGAGTCAGTATGCTTCTGAAGGTGGCTCTCAGCTCTATGTTCCTGCAGGAAAATGGCTCACTGGTAGCTTCAGCCTCACTAGTCACTTCACCCTCTATCTTGACAAAGATGCTGTTCTCCTTGCTTCTCAGGATATAACTGAGTGGCCTGTGCTTGAACCCCTCCCATCATACGGTAGAGGAAGAGACGCACCAGCAGGAAGATTCACAAGCCTCATATTTGGAACAAACCTCACTGATGTTATTGTCACAGGTGAAAATGGCACCATAGATGGTCAGGGTGAGTTTTGGTGGCAGCAATTTCACAGGAAAAAGTTGAAGTACACTCGCCCATACCTGATTGAATTAATGTTCTCAGACAACATTCAAATCTCAAATCTAACTCTACTCAATTCCCCATCATGGAATGTTCATCCAGTTTACAGCAGCAATATTATTGTGCAAGGCATCACCATTTATGCTCCTGTCACATCTCCAAACACTGATGGCATCAACCCAGATTCTTGCACAAATGTAAGAATTGAAGATTGCTATATAGTTTCTGGGGATGACTGTGTGGCGGTTAAGAGTGGATGGGATGAGTATGGCATAAAATTTGGGTGGCCCACCAAACAGCTAGTGATAAGAAGGCTAACATGCATCTCACCATACAGTGCAACCATTGCCTTGGGAAGTGAGATGTCAGGTGGAATCCAAGATGTGAGAGCTGAGGACATCACAGCAATCCAAACAGAATCAGGTGTCAGAATCAAGACAGCAGTAGGGAGAGGAGGGTATGTGAAGGACATATATGTGAAGAGAATGACCTTGCATACTATGAAATGGGCATTTAAGATGACTGGTGATTATAACTCACATGCTGATGGCCACTATGACCCTAATGCCTTGCCTGAGATCAAAAACATCAACTATAGAGATGTTGTGGCTGAAAATGTGACCATAGCTGCTAGGTTTCAAGGAATCTCCAATGACCCCTTTACAGGAATCTGCATTGCAAATGTGACACTAAGGATGGCAGCCAAGGCCAAGAAGCAGCCTTGGACCTGCACTGATATTGAAGGGATGACGAGTGGGGTGACCCCTCCACCTTGTGGTCTGTTACCTGATCAAGGGCCGGAGAAGATCACAGCATGTGATTTCCCAGCAGATAATCTACCTATTGACATAGTGGAGCTTAAGAAATGTACTACCACCATGACATATGTTGAAGTGTAG

Predicted protein sequences of Glyma18g47130

Limit To All Plant Sequences

>Glyma18g47130.1   sequence type=predicted peptide   gene model=Glyma18g47130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLLWKTHTRIHVIRTFFAILLVALLSSERVESRKAKVVTTSLEYNAINCRAHSAALTDFGGVGDGKTSNTKAFQSAISHLSQYASEGGSQLYVPAGKWLTGSFSLTSHFTLYLDKDAVLLASQDITEWPVLEPLPSYGRGRDAPAGRFTSLIFGTNLTDVIVTGENGTIDGQGEFWWQQFHRKKLKYTRPYLIELMFSDNIQISNLTLLNSPSWNVHPVYSSNIIVQGITIYAPVTSPNTDGINPDSCTNVRIEDCYIVSGDDCVAVKSGWDEYGIKFGWPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDITAIQTESGVRIKTAVGRGGYVKDIYVKRMTLHTMKWAFKMTGDYNSHADGHYDPNALPEIKNINYRDVVAENVTIAARFQGISNDPFTGICIANVTLRMAAKAKKQPWTCTDIEGMTSGVTPPPCGLLPDQGPEKITACDFPADNLPIDIVELKKCTTTMTYVEV*

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