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Report for Sequence Feature Glyma18g47111

Feature Type:gene_model
Chromosome:Gm18
Start:56747833
stop:56748872
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g47111
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G51030AT Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr5:20747862-20749352 REVERSE LENGTH=314 SoyBaseE_val: 2.00E-58ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
PTHR24322Panther FAMILY NOT NAMED JGI ISS
PTHR24322:SF19Panther SUBFAMILY NOT NAMED JGI ISS
PF00106PFAM short chain dehydrogenase JGI ISS
UniRef100_G7J2S1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Carbonyl reductase-like protein n=1 Tax=Medicago truncatula RepID=G7J2S1_MEDTR SoyBaseE_val: 2.00E-62ISS
UniRef100_I1KBV7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBV7_SOYBN SoyBaseE_val: 7.00E-76ISS

Expression Patterns of Glyma18g47111
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g47111 not represented in the dataset
Glyma18g47111 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g47111 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g236500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g47111
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g47111
>Glyma18g47111.1   sequence type=CDS   gene model=Glyma18g47111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCACAAAGAAAAATCAAAGGACCTAAAAGAAAAGAGATTGCAACAGATTTCTCTTTTGAGAACCATTCCTTATTCTGATCACCAGAGGTGGTGGTCCAAGGAAACTGTTGCTGTGGTTACAGGTGGAAACAGAGGAATTGGGTTTGAGATATGTAGGCAACTTGCTGGTCATGGAGTGACTGTTGTACTGACTTCAAGAGATGAAAGTGTTGGTGTTGAATCAGCTAAGGTCTTGCAAGAAGGTGGCTTCACGGAGGTGGCTTGTCATCAACTTGACATATTGGATCCTTCATCCATCAACCAATTTGCTGAATGGTTGAAAGAAAATTATGGTGGTTTAGACATTCTGGTCAGTTTCTAA
Predicted protein sequences of Glyma18g47111
>Glyma18g47111.1   sequence type=predicted peptide   gene model=Glyma18g47111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGHKEKSKDLKEKRLQQISLLRTIPYSDHQRWWSKETVAVVTGGNRGIGFEICRQLAGHGVTVVLTSRDESVGVESAKVLQEGGFTEVACHQLDILDPSSINQFAEWLKENYGGLDILVSF*






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