Glyma18g47090 - SoyBase

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Report for Sequence Feature Glyma18g47090

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56732729
stop:	56740196
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69070	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). \| chr1:25967421-25971389 REVERSE LENGTH=9	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2147	KOG	Nucleolar protein involved in 40S ribosome biogenesis	JGI		ISS
PTHR23183	Panther	NOP14	JGI		ISS
PF04147	PFAM	Nop14-like family	JGI		ISS
UniRef100_B9RUI4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nop14, putative n=1 Tax=Ricinus communis RepID=B9RUI4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EC8E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EC8E related cluster n=1 Tax=unknown RepID=UPI000233EC8E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g47090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g236200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47090

Limit To All Plant Sequences

>Glyma18g47090.2   sequence type=CDS   gene model=Glyma18g47090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTATGCTAGGACACCTCCACAGAGCATAGGTAGGCCACGTGCATTACGCGTGGAGGCTGCGCACGCATTAGAGCTGAACAGGAAGTTGAGCAAGAAAAGCAAGTATCACTTGTCTGATGGAGAGGAGAATGACTTTGAGGGAATTGATTCTCTTGGAAGAGATGATTTTGAGGATGAGATGCTTCCTGATGATATTGATGCTGAGACTGATGAGAAATTAGATTTGGTTCAACGGAGCATGCAGATTCCGGGGGAAACTAGTGCGGATGATGGGGAGGAAAATAGACATAAAAGCAAGAAGGAAGTGATGGAGGAAATTATCTCAAAAAGCAAGTTTTACAAGGCTCAAAAGGCAAAGGATAAAGAAGAAAATGAAAACTTGGTGGAAGAATTGGATAAGGATTTCACTTCCTTGGTTCAGTCTGAAGCCTTGTTATCTTTGACTGAACCCAACAAGATGAATGCTTTGAAGGCTCTGGTGAACAAAAGTATTTCAAATGATCAAAGTAATAAGGACCAGATGTCTGCTACTCGGACAATGGATAATTCTGTGCAGGAAAAACCTGATGATTATGACAAACTTGTCAAACAAATGGGGTTGGAAATGCGTGCTCGCCCTTCAGATAGGACAAAGACACCAGAGGAGATTGCTCAGGAGGAAAAAGAAGGTCTAGAGCAATTGGAGGAAGAGCGGCAGAAGAGGATGGTTGCGGCTGAAGATTCAAGTGATGAAGACAATGAAGATTCAGAAAAGCCATTTGAACAGAAACCAAGATCTATATCTGGTGATGATCTTGGTGATTCCTTTTCTGTTAATGAACAAATTATGACCAAGAAGGGTTGGGTTGATGAGATTCTTGAAAGAAGAGATGAGGAAGATTCTTCTAGTGAAGATGATGATGGTGAAGATCCTGACAATTTGGGAAGCTCTGAAGATGCTGATGAAGGATCAGATGAAGATCTTGATGAACACGAGAAGGATCTTTCTTTAAAAGATTGGGAACAAAGTGATGATGATGATATTGGTGCAGATTTAGAAGATGAAGATGATAGTGATGAGAATATAGAAACAGCTGCAGAAGACCTTGATGAGTCAAAAGAGTTGGACATTCCTTATATAATTCAAGCTCCGAAGACCTTTGAAGAATTATGTTCACTGGTGGATAAACATTCAAATGACAACGTTATTTTGATCATCAATCGGATTCGGAAAAGTAATCCAATCACACTCGCAGCAGAAAATCGAAAGAAAATGCAAGTATTCTATGGAGTATTGTTGCAATATTTTGCTGTTTTGGCAAATAAGGAACCACTTAATGTTGAGTTACTCAATATGCTGGTGAAACCGTTGATAGAGATGAGTAAGGAAATCCCATACTTTGCTGCAATATGTGCTCGTCGCAGAATAGAAGCTACCAGAAAACAATTCATTGAAAGTATCAAACAATCAGAAAGTAGCAGTTGGTCTTCTTCAAAAACGTTGTGCCTCTTGCGTTTGTGGTCCATGATATTTCCATGCTCTGACTTTAGGCATCCAGTTATGACTCCTGTGATATTGTTGATGTGTGAATATCTGATGCGTTGCCCAATAGTATCTGGTCGTGATATTGCCATTGGCTCTTTCTTATGCTCTATGCTTCTCTCATCTCGAAAATTCTGTCCTGAAGCAATAATATTTCTTCGAACTTCGCTGTTGGCAGCTACTGAAAGTAAACATGTTTCAGATGAAGATTCCCAGTTATATCATCTTATGGAACTGAAAGCTATCAAACCTCTCCTATGCATTCAGGAGACAGTGAATGAGATTAGTCCTCTGAATTTCTTCAAAATAATAGACATGCCAGAAGACTCTTCTTTCTTCACTTCTGTTAGTTTCAGGGCTAGTGTATTAGTTGCAGTTGTTGAAACTTTACAAGGATATGTCAACGTCTATGAAGGTTTAAGTTCATTTCCTGAAATGTTCCTACCAATTTTTAAATTATTAAATGAGATAGCAGAACAAAAAAATATGCCAAATGTATTACGAGATAAAATTAAAGATGTGGCTGAGCTCATTAAGTTGAAAGTGGATGAGCATCACACTTTGAGGCGACCACTTCAAATGCGGAAACAAAAGCCTGTACCAATCAAATTACTGAATCCCAAGTTTGAGGAGAACTATGTCAAGGGTAGAGACTATGATCCTGATCGTGAACAAGCTGAACTGAGAAAATTGAAGAAACAGTTGAAGTGTGAAGCTAAAGGGGCTGCACGAGAATTGCGTAAAGACAACTACTTCTTGCTGGAGGTGAAGGAAAAAGAGAGGTCTTTACAGGAAAAAGATAGAGCAGAGAAGTATGGAAGAGCTAAAGCTTTCCTTCAAGAGCAAGAACATGCCTTTAAATCAGGACAATTAGGAAAAGGGAGAAAAAGGAGGAGATAA

Predicted protein sequences of Glyma18g47090

Limit To All Plant Sequences

>Glyma18g47090.2   sequence type=predicted peptide   gene model=Glyma18g47090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYARTPPQSIGRPRALRVEAAHALELNRKLSKKSKYHLSDGEENDFEGIDSLGRDDFEDEMLPDDIDAETDEKLDLVQRSMQIPGETSADDGEENRHKSKKEVMEEIISKSKFYKAQKAKDKEENENLVEELDKDFTSLVQSEALLSLTEPNKMNALKALVNKSISNDQSNKDQMSATRTMDNSVQEKPDDYDKLVKQMGLEMRARPSDRTKTPEEIAQEEKEGLEQLEEERQKRMVAAEDSSDEDNEDSEKPFEQKPRSISGDDLGDSFSVNEQIMTKKGWVDEILERRDEEDSSSEDDDGEDPDNLGSSEDADEGSDEDLDEHEKDLSLKDWEQSDDDDIGADLEDEDDSDENIETAAEDLDESKELDIPYIIQAPKTFEELCSLVDKHSNDNVILIINRIRKSNPITLAAENRKKMQVFYGVLLQYFAVLANKEPLNVELLNMLVKPLIEMSKEIPYFAAICARRRIEATRKQFIESIKQSESSSWSSSKTLCLLRLWSMIFPCSDFRHPVMTPVILLMCEYLMRCPIVSGRDIAIGSFLCSMLLSSRKFCPEAIIFLRTSLLAATESKHVSDEDSQLYHLMELKAIKPLLCIQETVNEISPLNFFKIIDMPEDSSFFTSVSFRASVLVAVVETLQGYVNVYEGLSSFPEMFLPIFKLLNEIAEQKNMPNVLRDKIKDVAELIKLKVDEHHTLRRPLQMRKQKPVPIKLLNPKFEENYVKGRDYDPDREQAELRKLKKQLKCEAKGAARELRKDNYFLLEVKEKERSLQEKDRAEKYGRAKAFLQEQEHAFKSGQLGKGRKRRR*

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