Glyma18g47070 - SoyBase

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Report for Sequence Feature Glyma18g47070

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56723792
stop:	56726397
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00300	AT	Annotation by Michelle Graham. TAIR10: fringe-related protein \| chr4:128690-130126 FORWARD LENGTH=478	SoyBase	E_val: 2.00E-130	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PF11721	PFAM	Di-glucose binding within endoplasmic reticulum	JGI		ISS
UniRef100_B9RDW0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDW0_RICCO	SoyBase	E_val: 1.00E-153	ISS
UniRef100_I1N3T4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3T4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47070

Paralog	Evidence	Comments
Glyma09g39246	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g236000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47070

Limit To All Plant Sequences

>Glyma18g47070.1   sequence type=CDS   gene model=Glyma18g47070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCATATAACAATACTCATAAAAACCAAATACAATTATAGAAATGGAAGGGTTTTCACAAGCCCCGCCAGATACACCTTCCCCGTCTCCGACAAAGGCACCCACATCGTGCGCCTCCACTTCCACCCCTTCACCACCCCAAATCTCGATCTGGGTCTCGCCCAATTTCACGTCTTGCTCAACGCTCACGTCGCTCTCAGCAACTTCACTCGCTTGCTAAGCGACGCCACAAACCCTAGCATCGTCGAGTATCTCATCTGGGTCGACGCGGAGAAGCTCGAAATCGTGTTTGTTCCGAACAAAGACTCCAGATTGGCGTTCGTCAACGCCATTGAGGTGATTTCCGCGCCCAAAGACCTTGTCCCCGACACCGCACAGTATTTGAGTTCATCGAAATTAGAGAAATTTGAGGGTTTGAACAAACAGGCTCTTGAAGTTGTTTACAGGGTCACTGTTGGGGGTGTTAAAGTTACCCCTTTTAATGATTCCTTGTGGAGAACTTGGGTTCCTGATGATGGGTTTTTCAGACCAAGTGTTGGGTCGGAAAAGCTTTACTTTGGTGGGAGAATCAATTACCATGTTGGAGGGGCTAGTCGTGAGGTTGGGCCTGATAATGTGTATAATAGTGCTAGGTTGATTAGGAGTAAGAATGATTCTGTTCCTAACGTTAATATGACTTGGGTGTTTCCGGTTGTTGGAGGGTATAAGTACTTGGTTCGGTTGCATTTCTGTGATATTGCTAGCATTTCGGTTGGTTTGCTTTACTTCAATGTTTATGTCAATGGAAATTTGGCTTATGAAGATTTGGATCTCTCATACGTTACGAATTCGCTGGCTTCGCCGTTCTATGCGGACTTTGTGGTTGATGGAGGAGATGGGGCCTTGAGTGTTGGTGTAGGTCCTTCGAAGAGCAGCATGCCGCATGTCATCGATGGGATATTGAATGCGGTTGAGGTTATGAAGTTGAACAATTCTCGCAGTAGTCTTGATGGAGAGGTTTGTGCTGATTTAGTTATGAAGAGCTGGTCGACGAGGAATAATACAGGTATGCTGTTTACTTTGGTGGCTGCTGTTTGCATTGTGTTGAGCTTGTCCATAGTGATTCGTAGGAGTTGA

Predicted protein sequences of Glyma18g47070

Limit To All Plant Sequences

>Glyma18g47070.1   sequence type=predicted peptide   gene model=Glyma18g47070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTHITILIKTKYNYRNGRVFTSPARYTFPVSDKGTHIVRLHFHPFTTPNLDLGLAQFHVLLNAHVALSNFTRLLSDATNPSIVEYLIWVDAEKLEIVFVPNKDSRLAFVNAIEVISAPKDLVPDTAQYLSSSKLEKFEGLNKQALEVVYRVTVGGVKVTPFNDSLWRTWVPDDGFFRPSVGSEKLYFGGRINYHVGGASREVGPDNVYNSARLIRSKNDSVPNVNMTWVFPVVGGYKYLVRLHFCDIASISVGLLYFNVYVNGNLAYEDLDLSYVTNSLASPFYADFVVDGGDGALSVGVGPSKSSMPHVIDGILNAVEVMKLNNSRSSLDGEVCADLVMKSWSTRNNTGMLFTLVAAVCIVLSLSIVIRRS*

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