Glyma18g47060 - SoyBase

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Report for Sequence Feature Glyma18g47060

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56712581
stop:	56718318
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01580	AT	Annotation by Michelle Graham. TAIR10: ferric reduction oxidase 2 \| chr1:209395-212810 FORWARD LENGTH=725	SoyBase	E_val: 0	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009735	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus	SoyBase	N/A	ISS
GO:0015688	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron chelate transport	SoyBase	N/A	ISS
GO:0055072	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000293	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ferric-chelate reductase activity	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
PTHR11972	Panther	NADPH OXIDASE	JGI		ISS
PTHR11972:SF3	Panther	UNCHARACTERIZED	JGI		ISS
PF01794	PFAM	Ferric reductase like transmembrane component	JGI		ISS
PF08022	PFAM	FAD-binding domain	JGI		ISS
PF08030	PFAM	Ferric reductase NAD binding domain	JGI		ISS
UniRef100_F5BSM3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ferric reductase n=1 Tax=Lotus japonicus RepID=F5BSM3_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E417	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E417 related cluster n=1 Tax=unknown RepID=UPI000233E417	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g47060 not represented in the dataset	Glyma18g47060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g47060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g235900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g47060

Limit To All Plant Sequences

>Glyma18g47060.1   sequence type=CDS   gene model=Glyma18g47060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTAGAAGCGGTGAAAAGGTCTCCTTCTCAAGAAAAATATGGCAGGGTTCAATCTGCAATAAGGTTGTTAGTGCTGGTTGTGTTTCTGGGTTGGATTTTCGTATGGATAGTGACTCCAACAAACACTTACCAACAAAAATGGCAGCCTCGGCTTCAAGCAAAGACTAATTCTATTTTTGGTGCACAAGGTGCAATGCTTCTGGTATACACTTTTCCAATCTTGTTCATAGCTGTTTTGGGATGTGTGTACGTTCACATAGCCAAAAAAGGAAACGGTTTCGGCAAGGAAAGCTGCAGTAGTTATGGCAAGAAACGTGAGGTATCTATATGGAAGCGTTTGGTGCTTGTGAGAGGCCCTCTTGGCATAGTTTCTGGAACAGAAATGGTCTTCTTGTTAATGTTCATTGTTCTCCTAGTTTGGTCCTTTTCAATCTATCTGCATAATGGCTTTGCCAAAATCACCCACAAATCAGCAGCAGAACACGGTCTAAAAGTCTGGGAGAAGAAACTAGATATTGCATCTGTGAGGTTGGCCCTAGTTGGGAACATATGCTTGGCATTCCTGTTTTTCCCGGTTGCTCGTGGTTCCTCAGTGCTACCTCTGCTTGGACTCACACCAGAGAGTTGCATCAAATACCATATTTGGCTAGGAAACGTGGCCATGACCCTTTTCACTGCTCATGGTATTTGTTTCATCATCTATTGGACAGTTACCGATAAACTTTCAAAGATGCTAGAATGGAAAAAAACTGGGATATCAAATGTAGCTGGAGAGGTTGCTTTGCTTGCTGGTTTGTGCATGTGGATTGCAACCATCCCTCGCAATAGGCGAAAAGTTTTTGAGCTCTTCTTCTACACTCACTACCTCTACACCCTCTTCATTGTCTTCTTCATCTTTCACGTGGGCATTTTCTATGCATGCACTATTCTCCCCGGTTTCTACCTCTTCTTGGTTGATCGGTACCTAAGGTTTTTGCAATCAAGACGCCGAGTTCGTTTGGTTTCTGCTCGTGTTTTACCATGTGAAACTGTAGAACTCAACTTCTCCAAGAGCCATGATTTGACTTATAATCCCACAAGTATTATGTTCATAAATGTACCAAGTATATCCAAACTTCAGTGGCATCCATTTACCATTACTTCTAATAGTAATTTGGAGCCAAAAATGATGAGTATTGTCATTAAAGGTGAAGGAACTTGGTCCCAGAAGCTCTACCAGATGCTTTCAACCCCTTCTGCAATTGATCATCTCAATGTCTCAGTTGAAGGTCCCTATGGACCAGCATCAACCAATTATCTAAGGTATGACACTATTGTGATGGTTAGTGGAGGGAGTGGAATCACCCCTTTTATATCCATCATCCGGGAGCTATTGTATTTGAACACAACATTCAGATATAGAACCCCAAAAGTTATCCTAATTTGTGCATTCAAGAACTCTTACTATCTCTCAATGCTAGACCTCATCCTTCCAAATTCTGGCACCCCCTATGATATGTCCAACATGCAACTACAAATTAAGGCTTACATCACAAGAAAGGAGGAGCATAGATTGGAAAACCAAATTCACCTTCAACAAATATGGTTCAAACCCAAGGCAACAGATGCACCCATATCAGCTATTTTAGGTCCAAACAATTGGCTTTGGCTTTGTGCTATAATCTCGTCCTCGTTCATAATTTTCCTCATCTTAATTGGGATCATTACCCGATTCATCATTTTCCCTATAGACCATAATTCTAATAAAATATTTTCACAACCTTTGAGGTCATTCCTCAACATTTTTGCAATATGTGTGTCCATATCAATGGCAGCTAGTGCAGCTGTTCTTTGGAACAAGAAATACAACGACAGAGAAGCAAAACAGATTCAGAACTTAGAAGGATCATCATCAGCAGAATCCCCAAAGTTGAATACTGATGAAGGAGATAAAGAACTGGAAAGCCTCCCACAGCAATCCCTTGTTCAAGCTACAAAGGTGCATTATGGAGCAAGACCTGATCTAAGAAGACTGCTATTGGAACTTGAAGGGTCAAGAGTGGGAGTTTTTGTTTCTGGACCCAAGAAAATGAGGCAAGAGGTTGCTGCCATTTGCTCATCTGATTTAGGAGAAAATCTGCATTTTGAATCCTTTAGCTTTAACTGGTAG

Predicted protein sequences of Glyma18g47060

Limit To All Plant Sequences

>Glyma18g47060.1   sequence type=predicted peptide   gene model=Glyma18g47060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVEAVKRSPSQEKYGRVQSAIRLLVLVVFLGWIFVWIVTPTNTYQQKWQPRLQAKTNSIFGAQGAMLLVYTFPILFIAVLGCVYVHIAKKGNGFGKESCSSYGKKREVSIWKRLVLVRGPLGIVSGTEMVFLLMFIVLLVWSFSIYLHNGFAKITHKSAAEHGLKVWEKKLDIASVRLALVGNICLAFLFFPVARGSSVLPLLGLTPESCIKYHIWLGNVAMTLFTAHGICFIIYWTVTDKLSKMLEWKKTGISNVAGEVALLAGLCMWIATIPRNRRKVFELFFYTHYLYTLFIVFFIFHVGIFYACTILPGFYLFLVDRYLRFLQSRRRVRLVSARVLPCETVELNFSKSHDLTYNPTSIMFINVPSISKLQWHPFTITSNSNLEPKMMSIVIKGEGTWSQKLYQMLSTPSAIDHLNVSVEGPYGPASTNYLRYDTIVMVSGGSGITPFISIIRELLYLNTTFRYRTPKVILICAFKNSYYLSMLDLILPNSGTPYDMSNMQLQIKAYITRKEEHRLENQIHLQQIWFKPKATDAPISAILGPNNWLWLCAIISSSFIIFLILIGIITRFIIFPIDHNSNKIFSQPLRSFLNIFAICVSISMAASAAVLWNKKYNDREAKQIQNLEGSSSAESPKLNTDEGDKELESLPQQSLVQATKVHYGARPDLRRLLLELEGSRVGVFVSGPKKMRQEVAAICSSDLGENLHFESFSFNW*

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