Glyma18g47000 - SoyBase

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Report for Sequence Feature Glyma18g47000

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56656720
stop:	56666856
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g47000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46060	AT	Annotation by Michelle Graham. TAIR10: transmembrane protein-related \| chr2:18941355-18945000 REVERSE LENGTH=807	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR14319	Panther	FIVE-SPAN TRANSMEMBRANE PROTEIN M83	JGI		ISS
PTHR14319:SF3	Panther	NAG-5 PROTEIN	JGI		ISS
PF12036	PFAM	Protein of unknown function (DUF3522)	JGI		ISS
UniRef100_G7KT23	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein 8B n=1 Tax=Medicago truncatula RepID=G7KT23_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EC8D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EC8D related cluster n=1 Tax=unknown RepID=UPI000233EC8D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g47000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g47000

Paralog	Evidence	Comments
Glyma09g39290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g47000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g235400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g47000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g47000

Limit To All Plant Sequences

>Glyma18g47000.3   sequence type=transcript   gene model=Glyma18g47000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCAAAGTCCAAACAGAACACACAGATCCGGTTGATTAACCGAGGTCTAACACCTTCGACTCAAGTCAACCCAACAAGACTTTTAACTAAGCAAACAGCATCATAATCATATTCATGGTATCATAGATTTTGTGTCAATTGTGTGATTATTTTTTTTAAGTACATAACCCCTGACTCATAATTCCCACTCTCTAGTTGTCTTCTACCACATTCCCCACTAACTAAGATTTCTCATTATTATCTAATTAATTAATCATCCACCAACACCCTTCTGCGTCACTCACTTTCTGGCGTCTGCATGATCTGAGAGTGAGAATTGCCTCAAAATCACTCCAACATGGGTTTCAATTTGATTCTGTGGTGTCATCATCCTAATCTGGTTCTCAGTGTTTTGGTGCTCTTTTCCTGTTCCTTTTGCCTTTTCTCTGCAAATGATGAAGTGGGCACTGGTGAAGGTGAAACCTTTACTGTTTCAAGCTTCAGATACCCTGCGACTAGGCTCAGGCCCTTTGATTTGCGCTATATCAGAGGATGTCTCAAGAATTGAAAGGGTTCCAATGAGCACATTGCCAATAATATGCTTTAGAGATGGAAGTCCTCCACTGCCAGATGCCTTAAATACATCTCTGAAGGATTCAGCCACCTCTGGTATAAATGATCTAGATGTGGAGCGGTGCTTTCCTATGCAGAAAAATATCACTATGAAACTGACAAACAATCAGATATCTCCAGGTGTTTGGTACATTGGTCTTTTCAATGGCATTGGACCTACAAGGACGCAGTCAAAGATGATTATCCGTGGTCCATCATTTTCCTTCATTGCTAATATAAGTGTGGAAGCATGCACAAATTCAATGATGAGGGGGGATTTCTGTAACAGTTCAGTTTATCCACTTTCATGTGCAGAATCTGATGTCTCTAATGCTTTGGAAGCTAAAATGAACAAGTCAATGTTGGAAAGTTTGGTGACCTGCAAAAGTAATTTTGAAGCTTTTTGTGTTCATGAAGGCATGCCAAACTTCTTCTCCCTGGATATTATGAATGTGGCAGAAGAAATTATCATTACGGCAGCAAATATCAGATTCAATGTTAGTCGATCAAATGATATTAGTTTAATGTGTTTTGTCCGCCATGGTGCAATGCCTTCTGTGACTTCGAATGATTATAACATTAATATTGCTAAAGGCCCACTGGTTATTCATTCACCATTAATTGGCCGTTGGTACATTAGTATAGTGCCAGTCAATCTTACAAAGACTCAGGATAACAGTGTAAGAGTTTGCTATTCAGTGGAATCTCAAGTGCTTCAATGCCCACTTGGGAAAGCTGGACCAAATTGTACAATGGATAGCTACTTGCTTCAGACATTTGTAAGGAGAGGTTCAACCCCCTTTGAGTCATATTATTTACCAGTTGTTGGAGGAGCATCGTATGATTCTGCCAATTTCCCTCTCGAGCCACTTTTAGACGACTCATCATACAGTGGAGAACCTGATAACATTTGGACTTACTTTCTTCTGAACATTCCTCGTGGTGCAGCTGGAGGAAATATTCACATACAGCTATCCTCAGATATGAAGATCAGTTATGAAGTGTATGCTAGATTTGGTGGATTACCATCTCTTGATAGCTGGGACTATTATTATGCTAACAAGACAAGGAGGAGTGATCCATCTATGTTTTTCACACTATATGACTCAAGTGATAACAAAGTTAATTTTTATATTATGTATGCTAGAGAAGGAACTTGGGGTATTGGTCTAAGACATCTTAATACCAGCAGTGATTCCATGAAAGGGCTTACTATCATGTCTATTTCACTTGAGCGATGCCCAAAACGATGCTCCTCTCATGGAGAATGTAAATTTTCTTTTGATGCTAGTGGATTGACATCGTACAGCTTCTGCTCTTGTGATCGAAACCATGGAGGCTTCGACTGTAGCATTGAGATTGTAACACATCAAGGACATGTACGGCAATCAATTTTTCTCATTGTATCAAATGCTGCAGCCATACTTCCTGCCTACTGGGCCCTTCGGAAGAAGGCATTAGCAGAATGGGTTTTATACACATCCAGTGGGATTTCAAGTGGACTATATCATGCGTGTGATGTAGGAACCTGGTGTGCATTGAACTATAATGTCTTACAGTTCATGGACTTCTGGCTCTCTTTCATGGCTGTGATTAGCACTTTCCTTTATCTAGCTACCATTGATGAAGTACTTAAGAGAGCAATCCACACAGCTGTTGCTATCCTTACTGCCCTAATGGCTGCAACAAAAGCAACCAGGTCTTCCAATGTTATTCTTGTAATTGTGATTGGTGCTCTTGGTTTGTTTATTGGATGGTTGATAGAAATCTCAACAAAGTATAGGTCCCTTTCCTTTTCAATTGGAATCTCATTTAATTTCTCTCACTGTTTCCAAACTATAAAGCAGTGGCTCTATAATCTTGTCAAGACACTTTTGAGACGGTACCACTGGGCATTTGCCTTGGCTGGTTTTCTTGCATTGGCCATGGCAGCAATAAGCTGGACACTTGAAACCAGTGAAACCTACTGGTTTTGGCATAGCATTTGGCATATTACAATATACACATCTTCTTTCTTCTTCCTTTGTTCAAAAGCAAATATTGAGGATACTGAGAATCAGCTTCCTACAAATGGAAACTATGAATTGACTCATCAGGATTCACTTCCAAGAACTGGTTAGAATAAAGTAAATGGAATACCGAGTAATGGTTTATGGATACTTGCATAGTGTATACACTCAATCAACACCCTTCATTTATCCCTATCTCTATTTTCTTATCACATCATATTTCTTACTACATCTACACTTTTCTCTCTTGTATCTCTTTCTCTGGGTGTATGTATATTGGGTTTGAGTGTCCATAAATCATTTTTGTTAAAAATTTTGGTGTTTTGAGGCAAGTTGTGGAGACGGCTCAAGAATGTGTGGCTACTGCTATTGAATTTTGATGCCAAAAACAATGACCAAGCAAAGCAGTCTCTTGTAAATCTTGCAGCATAAGGTTTGTTTCTGCCATTCTTTATAGGATAATTTTGGCATGACTGTGTCTAGGATAAAGAATCAAACTACGGATATATTTTTGTCATAGGATGAAGGAGCTTTGTTCATGTAATTATGATTTAGAAGTTAACTTGCCTTTGAACTGTATCATATTTAGAGATCTTTCTTATAAAAATAACTCAACATGATAGATCTAATTTACGCCAGCAGTTTCTTT

Coding sequences of Glyma18g47000

Limit To All Plant Sequences

>Glyma18g47000.2   sequence type=CDS   gene model=Glyma18g47000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTCAATTTGATTCTGTGGTGTCATCATCCTAATCTGGTTCTCAGTGTTTTGGTGCTCTTTTCCTGTTCCTTTTGCCTTTTCTCTGCAAATGATGAAGTGGGCACTGGTGAAGGTGAAACCTTTACTGTTTCAAGCTTCAGATACCCTGCGACTAGGCTCAGGCCCTTTGATTTGCGCTATATCAGAGTTGACTTGCCGCCATGGTTTTCTGCACTGTCTATAGCATTGAACTCAGATGTAGACCTTGATGTCTCAAGAATTGAAAGGGTTCCAATGAGCACATTGCCAATAATATGCTTTAGAGATGGAAGTCCTCCACTGCCAGATGCCTTAAATACATCTCTGAAGGATTCAGCCACCTCTGGTATAAATGATCTAGATGTGGAGCGGTGCTTTCCTATGCAGAAAAATATCACTATGAAACTGACAAACAATCAGATATCTCCAGGTGTTTGGTACATTGGTCTTTTCAATGGCATTGGACCTACAAGGACGCAGTCAAAGATGATTATCCGTGGTCCATCATTTTCCTTCATTGCTAATATAAGTGTGGAAGCATGCACAAATTCAATGATGAGGGGGGATTTCTGTAACAGTTCAGTTTATCCACTTTCATGTGCAGAATCTGATGTCTCTAATGCTTTGGAAGCTAAAATGAACAAGTCAATGTTGGAAAGTTTGGTGACCTGCAAAAGTAATTTTGAAGCTTTTTGTGTTCATGAAGGCATGCCAAACTTCTTCTCCCTGGATATTATGAATGTGGCAGAAGAAATTATCATTACGGCAGCAAATATCAGATTCAATGTTAGTCGATCAAATGATATTAGTTTAATGTGTTTTGTCCGCCATGGTGCAATGCCTTCTGTGACTTCGAATGATTATAACATTAATATTGCTAAAGGCCCACTGGTTATTCATTCACCATTAATTGGCCGTTGGTACATTAGTATAGTGCCAGTCAATCTTACAAAGACTCAGGATAACAGTGTAAGAGTTTGCTATTCAGTGGAATCTCAAGTGCTTCAATGCCCACTTGGGAAAGCTGGACCAAATTGTACAATGGATAGCTACTTGCTTCAGACATTTGTAAGGAGAGGTTCAACCCCCTTTGAGTCATATTATTTACCAGTTGTTGGAGGAGCATCGTATGATTCTGCCAATTTCCCTCTCGAGCCACTTTTAGACGACTCATCATACAGTGGAGAACCTGATAACATTTGGACTTACTTTCTTCTGAACATTCCTCGTGGTGCAGCTGGAGGAAATATTCACATACAGCTATCCTCAGATATGAAGATCAGTTATGAAGTGTATGCTAGATTTGGTGGATTACCATCTCTTGATAGCTGGGACTATTATTATGCTAACAAGACAAGGAGGAGTGATCCATCTATGTTTTTCACACTATATGACTCAAGTGATAACAAAGTTAATTTTTATATTATGTATGCTAGAGAAGGAACTTGGGGTATTGGTCTAAGACATCTTAATACCAGCAGTGATTCCATGAAAGGGCTTACTATCATGTCTATTTCACTTGAGCGATGCCCAAAACGATGCTCCTCTCATGGAGAATGTAAATTTTCTTTTGATGCTAGTGGATTGACATCGTACAGCTTCTGCTCTTGTGATCGAAACCATGGAGGCTTCGACTGTAGCATTGAGATTGTAACACATCAAGGACATGTACGGCAATCAATTTTTCTCATTGTATCAAATGCTGCAGCCATACTTCCTGCCTACTGGGCCCTTCGGAAGAAGGCATTAGCAGAATGGGTTTTATACACATCCAGTGGGATTTCAAGTGGACTATATCATGCGTGTGATGTAGGAACCTGGTGTGCATTGAACTATAATGTCTTACAGTTCATGGACTTCTGGCTCTCTTTCATGGCTGTGATTAGCACTTTCCTTTATCTAGCTACCATTGATGAAGTACTTAAGAGAGCAATCCACACAGCTGTTGCTATCCTTACTGCCCTAATGGCTGCAACAAAAGCAACCAGGTCTTCCAATGTTATTCTTGTAATTGTGATTGGTGCTCTTGGTTTGTTTATTGGATGGTTGATAGAAATCTCAACAAAGTATAGGTCCCTTTCCTTTTCAATTGGAATCTCATTTAATTTCTCTCACTGTTTCCAAACTATAAAGCAGTGGCTCTATAATCTTGTCAAGACACTTTTGAGACGGTACCACTGGGCATTTGCCTTGGCTGGTTTTCTTGCATTGGCCATGGCAGCAATAAGCTGGACACTTGAAACCAGTGAAACCTACTGGTTTTGGCATAGCATTTGGCATATTACAATATACACATCTTCTTTCTTCTTCCTTTGTTCAAAAGCAAATATTGAGGATACTGAGAATCAGCTTCCTACAAATGGAAACTATGAATTGACTCATCAGGATTCACTTCCAAGAACTGGTTAG

>Glyma18g47000.3   sequence type=CDS   gene model=Glyma18g47000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAGTGGGCACTGGTGAAGGTGAAACCTTTACTGTTTCAAGCTTCAGATACCCTGCGACTAGGCTCAGGCCCTTTGATTTGCGCTATATCAGAGGATGTCTCAAGAATTGAAAGGGTTCCAATGAGCACATTGCCAATAATATGCTTTAGAGATGGAAGTCCTCCACTGCCAGATGCCTTAAATACATCTCTGAAGGATTCAGCCACCTCTGGTATAAATGATCTAGATGTGGAGCGGTGCTTTCCTATGCAGAAAAATATCACTATGAAACTGACAAACAATCAGATATCTCCAGGTGTTTGGTACATTGGTCTTTTCAATGGCATTGGACCTACAAGGACGCAGTCAAAGATGATTATCCGTGGTCCATCATTTTCCTTCATTGCTAATATAAGTGTGGAAGCATGCACAAATTCAATGATGAGGGGGGATTTCTGTAACAGTTCAGTTTATCCACTTTCATGTGCAGAATCTGATGTCTCTAATGCTTTGGAAGCTAAAATGAACAAGTCAATGTTGGAAAGTTTGGTGACCTGCAAAAGTAATTTTGAAGCTTTTTGTGTTCATGAAGGCATGCCAAACTTCTTCTCCCTGGATATTATGAATGTGGCAGAAGAAATTATCATTACGGCAGCAAATATCAGATTCAATGTTAGTCGATCAAATGATATTAGTTTAATGTGTTTTGTCCGCCATGGTGCAATGCCTTCTGTGACTTCGAATGATTATAACATTAATATTGCTAAAGGCCCACTGGTTATTCATTCACCATTAATTGGCCGTTGGTACATTAGTATAGTGCCAGTCAATCTTACAAAGACTCAGGATAACAGTGTAAGAGTTTGCTATTCAGTGGAATCTCAAGTGCTTCAATGCCCACTTGGGAAAGCTGGACCAAATTGTACAATGGATAGCTACTTGCTTCAGACATTTGTAAGGAGAGGTTCAACCCCCTTTGAGTCATATTATTTACCAGTTGTTGGAGGAGCATCGTATGATTCTGCCAATTTCCCTCTCGAGCCACTTTTAGACGACTCATCATACAGTGGAGAACCTGATAACATTTGGACTTACTTTCTTCTGAACATTCCTCGTGGTGCAGCTGGAGGAAATATTCACATACAGCTATCCTCAGATATGAAGATCAGTTATGAAGTGTATGCTAGATTTGGTGGATTACCATCTCTTGATAGCTGGGACTATTATTATGCTAACAAGACAAGGAGGAGTGATCCATCTATGTTTTTCACACTATATGACTCAAGTGATAACAAAGTTAATTTTTATATTATGTATGCTAGAGAAGGAACTTGGGGTATTGGTCTAAGACATCTTAATACCAGCAGTGATTCCATGAAAGGGCTTACTATCATGTCTATTTCACTTGAGCGATGCCCAAAACGATGCTCCTCTCATGGAGAATGTAAATTTTCTTTTGATGCTAGTGGATTGACATCGTACAGCTTCTGCTCTTGTGATCGAAACCATGGAGGCTTCGACTGTAGCATTGAGATTGTAACACATCAAGGACATGTACGGCAATCAATTTTTCTCATTGTATCAAATGCTGCAGCCATACTTCCTGCCTACTGGGCCCTTCGGAAGAAGGCATTAGCAGAATGGGTTTTATACACATCCAGTGGGATTTCAAGTGGACTATATCATGCGTGTGATGTAGGAACCTGGTGTGCATTGAACTATAATGTCTTACAGTTCATGGACTTCTGGCTCTCTTTCATGGCTGTGATTAGCACTTTCCTTTATCTAGCTACCATTGATGAAGTACTTAAGAGAGCAATCCACACAGCTGTTGCTATCCTTACTGCCCTAATGGCTGCAACAAAAGCAACCAGGTCTTCCAATGTTATTCTTGTAATTGTGATTGGTGCTCTTGGTTTGTTTATTGGATGGTTGATAGAAATCTCAACAAAGTATAGGTCCCTTTCCTTTTCAATTGGAATCTCATTTAATTTCTCTCACTGTTTCCAAACTATAAAGCAGTGGCTCTATAATCTTGTCAAGACACTTTTGAGACGGTACCACTGGGCATTTGCCTTGGCTGGTTTTCTTGCATTGGCCATGGCAGCAATAAGCTGGACACTTGAAACCAGTGAAACCTACTGGTTTTGGCATAGCATTTGGCATATTACAATATACACATCTTCTTTCTTCTTCCTTTGTTCAAAAGCAAATATTGAGGATACTGAGAATCAGCTTCCTACAAATGGAAACTATGAATTGACTCATCAGGATTCACTTCCAAGAACTGGTTAG

Predicted protein sequences of Glyma18g47000

Limit To All Plant Sequences

>Glyma18g47000.2   sequence type=predicted peptide   gene model=Glyma18g47000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFNLILWCHHPNLVLSVLVLFSCSFCLFSANDEVGTGEGETFTVSSFRYPATRLRPFDLRYIRVDLPPWFSALSIALNSDVDLDVSRIERVPMSTLPIICFRDGSPPLPDALNTSLKDSATSGINDLDVERCFPMQKNITMKLTNNQISPGVWYIGLFNGIGPTRTQSKMIIRGPSFSFIANISVEACTNSMMRGDFCNSSVYPLSCAESDVSNALEAKMNKSMLESLVTCKSNFEAFCVHEGMPNFFSLDIMNVAEEIIITAANIRFNVSRSNDISLMCFVRHGAMPSVTSNDYNINIAKGPLVIHSPLIGRWYISIVPVNLTKTQDNSVRVCYSVESQVLQCPLGKAGPNCTMDSYLLQTFVRRGSTPFESYYLPVVGGASYDSANFPLEPLLDDSSYSGEPDNIWTYFLLNIPRGAAGGNIHIQLSSDMKISYEVYARFGGLPSLDSWDYYYANKTRRSDPSMFFTLYDSSDNKVNFYIMYAREGTWGIGLRHLNTSSDSMKGLTIMSISLERCPKRCSSHGECKFSFDASGLTSYSFCSCDRNHGGFDCSIEIVTHQGHVRQSIFLIVSNAAAILPAYWALRKKALAEWVLYTSSGISSGLYHACDVGTWCALNYNVLQFMDFWLSFMAVISTFLYLATIDEVLKRAIHTAVAILTALMAATKATRSSNVILVIVIGALGLFIGWLIEISTKYRSLSFSIGISFNFSHCFQTIKQWLYNLVKTLLRRYHWAFALAGFLALAMAAISWTLETSETYWFWHSIWHITIYTSSFFFLCSKANIEDTENQLPTNGNYELTHQDSLPRTG*

>Glyma18g47000.3   sequence type=predicted peptide   gene model=Glyma18g47000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKWALVKVKPLLFQASDTLRLGSGPLICAISEDVSRIERVPMSTLPIICFRDGSPPLPDALNTSLKDSATSGINDLDVERCFPMQKNITMKLTNNQISPGVWYIGLFNGIGPTRTQSKMIIRGPSFSFIANISVEACTNSMMRGDFCNSSVYPLSCAESDVSNALEAKMNKSMLESLVTCKSNFEAFCVHEGMPNFFSLDIMNVAEEIIITAANIRFNVSRSNDISLMCFVRHGAMPSVTSNDYNINIAKGPLVIHSPLIGRWYISIVPVNLTKTQDNSVRVCYSVESQVLQCPLGKAGPNCTMDSYLLQTFVRRGSTPFESYYLPVVGGASYDSANFPLEPLLDDSSYSGEPDNIWTYFLLNIPRGAAGGNIHIQLSSDMKISYEVYARFGGLPSLDSWDYYYANKTRRSDPSMFFTLYDSSDNKVNFYIMYAREGTWGIGLRHLNTSSDSMKGLTIMSISLERCPKRCSSHGECKFSFDASGLTSYSFCSCDRNHGGFDCSIEIVTHQGHVRQSIFLIVSNAAAILPAYWALRKKALAEWVLYTSSGISSGLYHACDVGTWCALNYNVLQFMDFWLSFMAVISTFLYLATIDEVLKRAIHTAVAILTALMAATKATRSSNVILVIVIGALGLFIGWLIEISTKYRSLSFSIGISFNFSHCFQTIKQWLYNLVKTLLRRYHWAFALAGFLALAMAAISWTLETSETYWFWHSIWHITIYTSSFFFLCSKANIEDTENQLPTNGNYELTHQDSLPRTG*

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