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Report for Sequence Feature Glyma18g46990

Feature Type:gene_model
Chromosome:Gm18
Start:56649325
stop:56653934
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g46990
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G00335AT Annotation by Michelle Graham. TAIR10: RING-H2 finger B1A | chr4:146866-147962 FORWARD LENGTH=190 SoyBaseE_val: 1.00E-70ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1493 KOG Anaphase-promoting complex (APC), subunit 11 JGI ISS
PTHR22766Panther RING FINGER PROTEIN 24-RELATED JGI ISS
PTHR22766:SF20Panther SUBFAMILY NOT NAMED JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_G7LBQ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7LBQ0_MEDTR SoyBaseE_val: 2.00E-95ISS
UniRef100_UPI000233E413UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E413 related cluster n=1 Tax=unknown RepID=UPI000233E413 SoyBaseE_val: 1.00E-132ISS

Expression Patterns of Glyma18g46990
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46990
ParalogEvidenceComments
Glyma09g39300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46990 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g235300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g46990
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g46990
>Glyma18g46990.1   sequence type=CDS   gene model=Glyma18g46990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCAAGGGGCACCAGTGTATTACTATTGCCCACCAACTTTTGAAGAGCGTGAGTCTTTAACATCTAATGATGGCTTGAATGCTTCAGTCAATGCTGGATTTCTTGTTGGTTTGAACCTGGAAGCATCCATGCCTGATACTTTCCAGCCCCCTCCTGTGCCTCTACCTTATGATATGGTCTTGGGAGGTTCTGCATCAACAGATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTTTGAAACTTCAATTACACTTGAAGATGTTGAAGAATCAGATTGTAAAGCTCAAGCCAATTCTGCTCCTACATCTCCAAAGAAGGCACAACTATCAAAATCAAATGTAACTCAAGAATTAGTGACAGAAGAAGAGGATGTCTGTCCAATTTGTCTTGAAGAATTTGATGTTGAAAATCCTAGAAATTTGACAAAATGTGAACACCATTTTCACTTATCATGCATTCTTGAGTGGATGGAAAGAAGTGACTCATGTCCTATATGTGATCAGGAGATGATATTTTGA
Predicted protein sequences of Glyma18g46990
>Glyma18g46990.1   sequence type=predicted peptide   gene model=Glyma18g46990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGCCCSARKPHLQGAPVYYYCPPTFEERESLTSNDGLNASVNAGFLVGLNLEASMPDTFQPPPVPLPYDMVLGGSASTDSESGRETVSSFETSITLEDVEESDCKAQANSAPTSPKKAQLSKSNVTQELVTEEEDVCPICLEEFDVENPRNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF*






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