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Report for Sequence Feature Glyma18g46980

Feature Type:gene_model
Chromosome:Gm18
Start:56635398
stop:56639398
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g46980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G00350AT Annotation by Michelle Graham. TAIR10: MATE efflux family protein | chr4:151978-153988 FORWARD LENGTH=542 SoyBaseE_val: 0ISS
GO:0006855GO-bp Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport SoyBaseN/AISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
GO:0030048GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament-based movement SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0015238GO-mf Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity SoyBaseN/AISS
GO:0015297GO-mf Annotation by Michelle Graham. GO Molecular Function: antiporter activity SoyBaseN/AISS
KOG1347 KOG Uncharacterized membrane protein, predicted efflux pump JGI ISS
PTHR11206Panther MULTIDRUG RESISTANCE PUMP JGI ISS
PTHR11206:SF49Panther DNA DAMAGE-INDUCIBLE PROTEIN JGI ISS
PF01554PFAM MatE JGI ISS
UniRef100_D7M5Q2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mate efflux family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M5Q2_ARALL SoyBaseE_val: 0ISS
UniRef100_I1N3S6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N3S6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g46980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46980
ParalogEvidenceComments
Glyma09g39330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g235200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g46980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g46980
>Glyma18g46980.1   sequence type=CDS   gene model=Glyma18g46980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAACAATGGTTTCAATTCCATGGAGACCACAGAGCTCCACCATGCTCCTGAGGGTCTTGTTGACACAAATGGAGGAGACTACACTGAAATGAGTGGCTTTGCAGATTTCAAAAACGTGTTCTCTGTGGAATCTATAAAGCTTTGGACAATTGCTGCTCCCATTGCCTTCAGCATACTATGCAATTATGCTGTCAATTCCTTCACGACTATCTTTGTTGGTCATCTTGGAGATTTAGAACTCTCTTCAGTTTCACTCTCTCTCTCTGTCGTTTCAAATTTCTCTTTTGGCTTCTTGCTTGGTATGGCAAGTGCACTAGAGACTTTATGTGGGCAAGCATTTGGTGCTGGACAAGTAGAAATGATAGGGGTCTACATGCAACGTTCTTGGTTAATCTTATTGGGTGCATGCATCTGCCTCACACCAATTTACATTTATGCTGAGCCAATCTTGCTACTCCTAGGACAAGAACCCGAAATTGCAGAATTAGCTGGGGCATTTACCATTCAATCCATCCCTCAGATGTTTTCTCTAGCCATCAATTTCCCCACTCAAAAGTTCTTGCAGGCACAAACCAAAGTGGGGTTTCTGGCATGGCTTGGTTTTGGAGCATTTATTTTTCATGTTATACTTCTATGGATTTTACTTAAAGTGTTTTCATTGGGTACAACTGGTGCTGCTGTAGCCTATTGCACAACAGCTTGGATTATTGCTTTGGCTCAAACGGCTTATGTGATTGGTTGGTGCAAGGATGGGTGGAGAGGCTTCTCATGGTTAGCATTCAAAGATCTTTGGGCCTTTGTGAAATTGTCTGTTGCTTCAGCAGTCATGCTTTGCCTAGAGATTTGGTATTTCATGATCTTGATTGTGCTCACTGGACACCTTGACAATGCAGTTATTGCTGTTGGTTCTCTTTCAATATGCATGACTATCAATGGATTTGAAGGCATGTTATTTATAGGGATCAATGCAGCAATTAGTGTGAGGGTTTCAAATGAGCTTGGATCAGGACGCCCAAGAGCAGCAAAATATTCAGTCATTGTCACAATTATTGAGTCCCTCATCATTGGGTTAATTAGTGCAGCCATTATTTTAGCTACAAAAGATCATTTTGCCATCATTTTCACTGAGAGTAAAGAGATGATAAAAGCAGTTTCTAAATTAGCAGGTCTTCTTGGCATAACCATGATTCTGAATAGTGTTCAGCCAGTTATATCAGGTGTTGCTGTAGGAGGAGGGTGGCAAGCTTTGGTAGCTTACATCAATCTATTTTGCTATTACATCATGGGGCTCCCTCTTGGCTTCCTTTTAGGTTACAAGTTGGGTTACAGAGTGGAGGGTATTTGGGTTGGAATGATCTGTGGGACAATGTTGCAAACGCTCATCTTGTTGTACATTGTCTATAAAACAAACTGGAACAAGGAGGTTGAGCAAGCATCAGAACGAATGCGGAAATGGACCGGACAAGAAATTGAAATTAATTTGGCAAATTCTCAGCAAACATTCACTCGGTGA
Predicted protein sequences of Glyma18g46980
>Glyma18g46980.1   sequence type=predicted peptide   gene model=Glyma18g46980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFNNGFNSMETTELHHAPEGLVDTNGGDYTEMSGFADFKNVFSVESIKLWTIAAPIAFSILCNYAVNSFTTIFVGHLGDLELSSVSLSLSVVSNFSFGFLLGMASALETLCGQAFGAGQVEMIGVYMQRSWLILLGACICLTPIYIYAEPILLLLGQEPEIAELAGAFTIQSIPQMFSLAINFPTQKFLQAQTKVGFLAWLGFGAFIFHVILLWILLKVFSLGTTGAAVAYCTTAWIIALAQTAYVIGWCKDGWRGFSWLAFKDLWAFVKLSVASAVMLCLEIWYFMILIVLTGHLDNAVIAVGSLSICMTINGFEGMLFIGINAAISVRVSNELGSGRPRAAKYSVIVTIIESLIIGLISAAIILATKDHFAIIFTESKEMIKAVSKLAGLLGITMILNSVQPVISGVAVGGGWQALVAYINLFCYYIMGLPLGFLLGYKLGYRVEGIWVGMICGTMLQTLILLYIVYKTNWNKEVEQASERMRKWTGQEIEINLANSQQTFTR*






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