Glyma18g46961 - SoyBase

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Report for Sequence Feature Glyma18g46961

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56624898
stop:	56626957
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46961

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G20830	AT	Annotation by Michelle Graham. TAIR10: transferases;folic acid binding \| chr2:8968370-8970479 REVERSE LENGTH=431	SoyBase	E_val: 7.00E-37	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005542	GO-mf	Annotation by Michelle Graham. GO Molecular Function: folic acid binding	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
KOG4595	KOG	Uncharacterized conserved protein	JGI		ISS
PF09811	PFAM	Essential protein Yae1, N terminal	JGI		ISS
UniRef100_C6TBV1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TBV1_SOYBN	SoyBase	E_val: 2.00E-96	ISS
UniRef100_F4IFK0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Folic acid binding / transferase n=2 Tax=Arabidopsis thaliana RepID=F4IFK0_ARATH	SoyBase	E_val: 3.00E-34	ISS

Expression Patterns of Glyma18g46961

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g46961 not represented in the dataset	Glyma18g46961 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46961

Paralog	Evidence	Comments
Glyma09g39351	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46961 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g235000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46961

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g46961

Limit To All Plant Sequences

>Glyma18g46961.1   sequence type=CDS   gene model=Glyma18g46961   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGACTTGTTTGATTCTTCGCTGAACTTGGAGGACACCCATTACAAGGAAGGCTATGACGAAGGCTACAGCCATGGCCTTGTCACTGGCAAGGAAGAAGCTAGGCAGGTTGGCCTCAAGGTTGGCTTTGAGGTTGGCGAGGAGCTTGGTTTCTATAGGGGTTGTGTCGAAATCTGGACTTCTGCGATCCGGCTCGACCCAACCTGTTTCTCTCCACGGGCTAAAACATTTATTTGCCAGATGGAGGAGTTGATCCAGAAATACCCTCTCATGGATCCAGAAAATGCACAAGTGCAAGAGATCATGGATAGCCTCAGGCTCAAGTTCAAGATGGCTTGTTCTTCCTTGCATGTCAAACTTGAGTATAATGGGTATCCCAAATCTTCTACGGAGGTCAATGATATTCAATTCTGA

Predicted protein sequences of Glyma18g46961

Limit To All Plant Sequences

>Glyma18g46961.1   sequence type=predicted peptide   gene model=Glyma18g46961   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDLFDSSLNLEDTHYKEGYDEGYSHGLVTGKEEARQVGLKVGFEVGEELGFYRGCVEIWTSAIRLDPTCFSPRAKTFICQMEELIQKYPLMDPENAQVQEIMDSLRLKFKMACSSLHVKLEYNGYPKSSTEVNDIQF*

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