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Report for Sequence Feature Glyma18g46951

Feature Type:gene_model
Chromosome:Gm18
Start:56608354
stop:56614360
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g46951
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46040AT Annotation by Michelle Graham. TAIR10: ARID/BRIGHT DNA-binding domain;ELM2 domain protein | chr2:18935684-18937807 REVERSE LENGTH=562 SoyBaseE_val: 6.00E-69ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
PF01388PFAM ARID/BRIGHT DNA binding domain JGI ISS
PF01448PFAM ELM2 domain JGI ISS
UniRef100_G7LAX0UniRef Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB165 n=1 Tax=Medicago truncatula RepID=G7LAX0_MEDTR SoyBaseE_val: 8.00E-140ISS
UniRef100_I1L6I0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6I0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g46951
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g46951 not represented in the dataset
Glyma18g46951 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46951
ParalogEvidenceComments
Glyma09g39361 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46951 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g234900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g46951
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g46951
>Glyma18g46951.1   sequence type=CDS   gene model=Glyma18g46951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGTAATGGTGATCCATTGGATTTGTATAAGCTTTTCATGGTGGTGAAGGAGAAGGGTGGTTATGATGCTGTTTGTAAGAACAAGTTGTGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTTCCTCTGCTGAACTTGTTTATAGTAAACATTTGAGTTCTCTAGAGGCATGCTTAAAGAATGCTACTGATGGTAAGTTCCCTGAGTGTGGTTTAATAGATGATAGAGTTAAGTTTCACAAGCATTTGATGGAGGCGCAAGCTGAATCCTTGTTGGATGACTCTGGTGAGGAAGAGGCGGGGGATGAACTCGAGAGGATAGTGTGTGACTGTAAGGATGGGAGGAAGTTGTGTGGTAGTAATAGAGTGAAGTATGTGAAACCGGAGTCAAATGTGGCTGAACTCGAGAGGGTATATGAGTATTTAGATGAAACGAAGTCGTGTGTTAGTGATAGTGTGAAGGGCAAGAAATCAGATTCTAATGGGGATGAATTTGATAATGTATGTGACTTTCTAGATGGGAGGGAGTTGTGTGATACTAATAGGGTGAAGGGTGTGAGTCCAGAGTCTAATGGGGACAAGAAAGTTCAGAGCAAAGGACTTGTTGATTTGGATATGCTGGACAATGGGACGGATGAGCATATTATCAGAAACTTGTGCAGTCTTAATACTGAGAGGAATATACTGGAAGAGTTTGATGGGGGGAAAATATTAACTGTGGATGCATCTGATGCAGAGAGCAACATGCCTAGATTGTCGGATGGAAGCAAGTGCTGTGATAATGATGATGATGATGATAGTGATGAAGTCTTGATATTGGATCCATCTGGTGTTGACAAAGAGATATTTGGTCGTAAGAGGAAGAGAGAGTCTAAGTCAGAAATGCTAAGTTGGATTACTAGCATTGCTAAAAATCCTTGTGATTCCACAGTCGGTTCGATTCCTGAAAAGTCTAAGTGGAAGTTTTACAGTAGTCAGGAGATCTGGAAGCAGGTTTTGTTGTTTCGAGAAGCTGTCTTTCTGAAGAAAGATTTTGAGACAACCAGTGAACAGCTTAATTGGCAGGGACAGAAAATGCATCCTTCTATGTATGATGATCGTGTTGGGGCAATGTACAATCTTAGACAGAGGTTGAAATGTGACAAGAGAGTTTTATTGGGAAAAACTACATCTGGAGGAGTCTCCTTAGCTTCATCTGGAGGAACACATGTGGATTTGGAGAGGACCCCAAGTTCTCATGCTGAAGATCGTGCTGAGAAATTGTTACCTGACTCCGGTACTGCTCACTCAAGCCTTGATAGATGTGCCAGAGTGCACATCCCTTTGGGGCCAAACCATCAAGCTGAAGTGCCAGAATGGACTGTCATAACTTATGAGGTTGATTCAAAGTGGTTGGGGACCCAAATATGGCCTCCAAAAACTGTAAATTCCAAATGTCGTCTTTTTGAAAGGGACCCCATTGGAGAGGGAAGACAAAATTCATGTGGCTGCCAAGTACAAGGTTCTGTTGAGTGTGTCCGGTTCCACATTGCTAAGAGAAGGGCTAAAGTTAAGTTGGAATTGGGTGAGGCGTTTCACCAATGGAATTTACATAAGGTAGGTGAAGAAGTTGGGGGTTCATGGACAGAGCAAGAAGAGAAGAAGTTCAAAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCATCTTTTCAAAACATTTCCTAAGAAGAGCAGAGAAGATTTAGTCAGCTACTATTTCAATGTCTTTCTTTTGCAGCGCAGAGCATATCAGAATAGGCATACTCCTGATAACATTGACAGTGATGATGATGAATCAGAATTCACACCATTGAGGAAAGTTTTTGGACATCAAACACCAAAACCTCGCAGCTTCACCTTGTTATCCCCCAAAAAAGCCACATTCAAAAGGGAAAATAACAAGTGA
Predicted protein sequences of Glyma18g46951
>Glyma18g46951.1   sequence type=predicted peptide   gene model=Glyma18g46951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSNGDPLDLYKLFMVVKEKGGYDAVCKNKLWDLVGEEYGLGVKVGSSAELVYSKHLSSLEACLKNATDGKFPECGLIDDRVKFHKHLMEAQAESLLDDSGEEEAGDELERIVCDCKDGRKLCGSNRVKYVKPESNVAELERVYEYLDETKSCVSDSVKGKKSDSNGDEFDNVCDFLDGRELCDTNRVKGVSPESNGDKKVQSKGLVDLDMLDNGTDEHIIRNLCSLNTERNILEEFDGGKILTVDASDAESNMPRLSDGSKCCDNDDDDDSDEVLILDPSGVDKEIFGRKRKRESKSEMLSWITSIAKNPCDSTVGSIPEKSKWKFYSSQEIWKQVLLFREAVFLKKDFETTSEQLNWQGQKMHPSMYDDRVGAMYNLRQRLKCDKRVLLGKTTSGGVSLASSGGTHVDLERTPSSHAEDRAEKLLPDSGTAHSSLDRCARVHIPLGPNHQAEVPEWTVITYEVDSKWLGTQIWPPKTVNSKCRLFERDPIGEGRQNSCGCQVQGSVECVRFHIAKRRAKVKLELGEAFHQWNLHKVGEEVGGSWTEQEEKKFKDVVKSNPASLDKCFWDHLFKTFPKKSREDLVSYYFNVFLLQRRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTPKPRSFTLLSPKKATFKRENNK*






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