Glyma18g46940 - SoyBase

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Report for Sequence Feature Glyma18g46940

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56589129
stop:	56592095
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G63800	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 5 \| chr1:23667888-23669003 REVERSE LENGTH=185	SoyBase	E_val: 6.00E-111	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0416	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF19	Panther		JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_I1L6I4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L6I4_SOYBN	SoyBase	E_val: 1.00E-131	ISS
UniRef100_Q9SPB9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carrier protein 4 n=2 Tax=Glycine max RepID=Q9SPB9_SOYBN	SoyBase	E_val: 1.00E-126	ISS

Expression Patterns of Glyma18g46940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g46940 not represented in the dataset	Glyma18g46940 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46940

Paralog	Evidence	Comments
Glyma09g39370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g234800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g46940

Limit To All Plant Sequences

>Glyma18g46940.3   sequence type=transcript   gene model=Glyma18g46940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATTATTATTACTATTATTGTTGTTATCTCCTAGTTGTGCTGATTGCTGCCTGAACCAAATTCTACTTCCTTTCAGCTGCACAAGAGTCTCCAATCCCAACTCTCTCTCTCTCTCTCTCTCCACTTGCCAAAGGAAAAGGCTAAAGAGAAGAAAAGGCAAAGCAAGGGACCAACCAAAACACACACAGAGAAACATGTCTTCCCCAAGCAAGCGCCGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATTAATGATGGAATGCAAGAATTTTATGTGCAATTTCATGGACCCAATGACAGTCCTTATCATGGTGGTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGATCGACCAAGTTATGAACAAAGGGTTAAAGGTCTTATCTGCTGATGGAATCGACTTCGTTGACATCTGCTACCAATATCATGTTACTGTCTTTTATGATACCATCAAATCCATGGCATAAAAGTGAGGCATAGAAACGAGTAAGGATGGAGTAGCTTAACAGGACAATCATTTAGTAGAACTTCTGTGTTATAAGAACACAAGAAATTTTGGTTCAGTAACAATTTTTGTGGTGATATAAAAAATAGGATGGAATGGAACTAAACCTAATGGAATGCATTTTATTCATTCCATCCAATGCCTTGTTATCTATCTATGGACAATGAAATGAGTACTGTGAAAAGTATGCTAAACCTGAAGACATAGGGGAAGCCACAGAAGAGAAATCCAGCGATGAGGAGATGAGTGAAGATGAATATGACTCTAGTGATGAACAGGTTGTTGGTAAAGCAGACCCCTAGCTTTGCATGCATGTCCTGTTCTTAACTTTGTATTTTATCTGTACATGATGTTCTTCTTCTAGTTCTGTTAATTCATCTCACCACATGTGAACTTATTATGGATAAGGGGGGAAATTCCCCTTCCTTCTAGTTTCCCAGTCGCTGTAAATAAAGTACCATTGATTTTCCTGATGCAATCATATTTCATGTTTAGCACTTTCAAGTGATTGTGCTGTTTAGCCATGGTAATTTAATCAACAATGCTAGCATACAGTGTATAAATAACACTCTTTGTATTGGGTGATTCATGTTTGTTCCATTAAATGATGTGAATCTTACTCTATTTATTTAGTCTCCCTTATTTGGTGCTTGTTTGTTTAAGTTGAATAAAATTGATTTTTAATATAAGTAA

>Glyma18g46940.4   sequence type=transcript   gene model=Glyma18g46940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATTATTATTACTATTATTGTTGTTATCTCCTAGTTGTGCTGATTGCTGCCTGAACCAAATTCTACTTCCTTTCAGCTGCACAAGAGTCTCCAATCCCAACTCTCTCTCTCTCTCTCTCTCCACTTGCCAAAGGAAAAGGCTAAAGAGAAGAAAAGGCAAAGCAAGGGACCAACCAAAACACACACAGAGAAACATGTCTTCCCCAAGCAAGCGCCGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATTAATGATGGAATGCAAGAATTTTATGTGCAATTTCATGGACCCAATGACAGTCCTTATCATGGTGGTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGATCGACCAAGTTATGAACAAAGGGTTAAAGGTCTTATCTGCTGATGGAATCGACTTCGTTGACATCTGCTACCAATATCATGTTACTGTCTTTTATGATACCATCAAATCCATGGCATAAAAGTGAGGCATAGAAACGAGTAAGGATGGAGTAGCTTAACAGGACAATCATTTAGTAGAACTTCTGTGTTATAAGAACACAAGAAATTTTGGTTCAGTAACAATTTTTGTGGTGATATAAAAAATAGGATGGAATGGAACTAAACCTAATGGAATGCATTTTATTCATTCCATCCAATGCCTTGTTATCTATCTATGGACAATGAAATGGTAACTTTATTCTATTTCATTTCATTTTATTCCGCACATCATTAGATATCCAAAAATATTCTTCTTTATCTAACTTGTTATAGACAACATCACTTTAATAGTTTTTTAAAATCTAGGCTTGAATTCTTCTGAGAACCAATTTCTGGGTTTTATTTCAGAAGCAATCAGGTTTTTTTTATTTATTTAATTCATACTTGACTGATGTGTCATTGGCTTCGATGTCAGAGTACTGTGAAAAGTATGCTAAACCTGAAGACATAGGGGAAGCCACAGAAGAGAAATCCAGCGATGAGGAGATGAGTGAAGATGAATATGACTCTAGTGATGAACAGGTTGTTGGTAAAGCAGACCCCTAGCTTTGCATGCATGTCCTGTTCTTAACTTTGTATTTTATCTGTACATGATGTTCTTCTTCTAGTTCTGTTAATTCATCTCACCACATGTGAACTTATTATGGATAAGGGGGGAAATTCCCCTTCCTTCTAGTTTCCCAGTCGCTGTAAATAAAGTACCATTGATTTTCCTGATGCAATCATATTTCATGTTTAGCACTTTCAAGTGATTGTGCTGTTTAGCCATGGTAATTTAATCAACAATGCTAGCATACAGTGTATAAATAACACTCTTTGTATTGGGTGATTCATGTTTGTTCCATTAAATGATGTGAATCTTACTCTATTTATTTAGTCTCCCTTATTTGGTGCTTGTTTGTTTAAGTTGAATAAAATTGATTTTTAATATAAGTAA

Coding sequences of Glyma18g46940

Limit To All Plant Sequences

>Glyma18g46940.2   sequence type=CDS   gene model=Glyma18g46940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCCCAAGCAAGCGCCGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATTAATGATGGAATGCAAGAATTTTATGTGCAATTTCATGGACCCAATGACAGTCCTTATCATGGTGGTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGATCGACCAAGTTATGAACAAAGGGTTAAAGAGTACTGTGAAAAGTATGCTAAACCTGAAGACATAGGGGAAGCCACAGAAGAGAAATCCAGCGATGAGGAGATGAGTGAAGATGAATATGACTCTAGTGATGAACAGGTTGTTGGTAAAGCAGACCCCTAG

>Glyma18g46940.3   sequence type=CDS   gene model=Glyma18g46940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCCCAAGCAAGCGCCGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATTAATGATGGAATGCAAGAATTTTATGTGCAATTTCATGGACCCAATGACAGTCCTTATCATGGTGGTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGATCGACCAAGTTATGAACAAAGGGTTAAAGGTCTTATCTGCTGA

>Glyma18g46940.4   sequence type=CDS   gene model=Glyma18g46940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCCCAAGCAAGCGCCGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATTAATGATGGAATGCAAGAATTTTATGTGCAATTTCATGGACCCAATGACAGTCCTTATCATGGTGGTGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGATCGACCAAGTTATGAACAAAGGGTTAAAGGTCTTATCTGCTGA

Predicted protein sequences of Glyma18g46940

Limit To All Plant Sequences

>Glyma18g46940.2   sequence type=predicted peptide   gene model=Glyma18g46940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRPSYEQRVKEYCEKYAKPEDIGEATEEKSSDEEMSEDEYDSSDEQVVGKADP*

>Glyma18g46940.3   sequence type=predicted peptide   gene model=Glyma18g46940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRPSYEQRVKGLIC*

>Glyma18g46940.4   sequence type=predicted peptide   gene model=Glyma18g46940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVQFHGPNDSPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRPSYEQRVKGLIC*

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