Glyma18g46920 - SoyBase

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Report for Sequence Feature Glyma18g46920

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56558788
stop:	56562631
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61440	AT	Annotation by Michelle Graham. TAIR10: cysteine synthase C1 \| chr3:22735885-22737792 FORWARD LENGTH=368	SoyBase	E_val: 0	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006535	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process from serine	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0019499	GO-bp	Annotation by Michelle Graham. GO Biological Process: cyanide metabolic process	SoyBase	N/A	ISS
GO:0019500	GO-bp	Annotation by Michelle Graham. GO Biological Process: cyanide catabolic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0032880	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein localization	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0051410	GO-bp	Annotation by Michelle Graham. GO Biological Process: detoxification of nitrogen compound	SoyBase	N/A	ISS
GO:0080147	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell development	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004124	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine synthase activity	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
GO:0050017	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-3-cyanoalanine synthase activity	SoyBase	N/A	ISS
KOG1252	KOG	Cystathionine beta-synthase and related enzymes	JGI		ISS
PTHR10314	Panther	PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILY	JGI		ISS
PTHR10314:SF8	Panther	THREONINE DEHYDRATASE	JGI		ISS
PF00291	PFAM	Pyridoxal-phosphate dependent enzyme	JGI		ISS
UniRef100_A5YT86	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine synthase n=1 Tax=Glycine max RepID=A5YT86_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_A5YT86	UniRef	Annotation by Michelle Graham. Best UniRef hit: Cysteine synthase n=1 Tax=Glycine max RepID=A5YT86_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g46920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46920

Paralog	Evidence	Comments
Glyma09g39390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g234600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g46920

Limit To All Plant Sequences

>Glyma18g46920.2   sequence type=transcript   gene model=Glyma18g46920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCAACAGCACACCACCAAAAGTCACAGTACATATATTGAACTTAGCCATCATTCCCTGACATGAAGCAAAATCTGGTTTGGTCATCCATAGATACCTCTGAAAACCAAATTAGACTCTTGCACCGCAATAATGGCAATAAAATACTAGCATAATTTATTTGTGAGTCTCAAAACCTTAGCACACAATATATATACACTGCATAGCCTTGGGGTCTTCAAAATCATCAATTCAATGGCTTCCCTCATGAGCACCATCCTCATGCAAAGGTCTTCTTCTACTTCACTTGCTGCTGGGAGGTTGTTCTCCACAACAACAGCAACCATTATTGATTCCCCTTCACTTGCTCAGAGAATCAGAGATTTGCCTAAGGACCTCCCTGGAACCAACATCAAGAAACATGTTTCTCAGCTCATTGGGAGGACTCCACTTGTTTATCTTAACAAAGTCACTGAAGGATGTGGAGCTTATGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTCCTGGAAAGACAACTCTGATTGAGCCCACGTCAGGCAATATGGGTATCAGCATGGCATTTATGGCCGCCATGAAGGGATACAAGATGGTTTTGACCATGCCCTCTTACACAAGCTTGGAAAGAAGGGTGACCATGAGAGTGTTTGGAGCTGAATTAATCCTCACTGATCCAGCCAAAGGAATGGGAGGAACAGTAAAGAAGGCTTATGAACTTTTGGAAAACACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACAAGTTGACATATTTGTTATGGGAATAGGTAGTGGAGGCACAGTCTCTGGGGTTGGACAATATCTTAAATCCAAAAATCCTAATGTTAAGATATATGGAGTGGAGCCAAGTGAAAGCAATGTGCTGAATGGTGGTAAACCTGGTCCTCATCATATAACTGGCAATGGAGTTGGATTCAAACCAGACATATTGGACATGGATGTTATGGAAAAAGTTCTTGAAGTTAGCAGTGAAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATGGTAATCTTCAAAAGACAATGTTGTAAACTTAAACAATGAATGCATGAGAAATTTCAAGCTTCATTAATTTAACCATGATTTTCACCCTAGGATTCACATATGATTCATTAGTAACTGACAAAGACTGTTCATAAATTGGTAATCAAATTCTGAATTTACAA

Coding sequences of Glyma18g46920

Limit To All Plant Sequences

>Glyma18g46920.1   sequence type=CDS   gene model=Glyma18g46920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCCTCATGAGCACCATCCTCATGCAAAGGTCTTCTTCTACTTCACTTGCTGCTGGGAGGTTGTTCTCCACAACAACAGCAACCATTATTGATTCCCCTTCACTTGCTCAGAGAATCAGAGATTTGCCTAAGGACCTCCCTGGAACCAACATCAAGAAACATGTTTCTCAGCTCATTGGGAGGACTCCACTTGTTTATCTTAACAAAGTCACTGAAGGATGTGGAGCTTATGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTCCTGGAAAGACAACTCTGATTGAGCCCACGTCAGGCAATATGGGTATCAGCATGGCATTTATGGCCGCCATGAAGGGATACAAGATGGTTTTGACCATGCCCTCTTACACAAGCTTGGAAAGAAGGGTGACCATGAGAGTGTTTGGAGCTGAATTAATCCTCACTGATCCAGCCAAAGGAATGGGAGGAACAGTAAAGAAGGCTTATGAACTTTTGGAAAACACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACAAGTTGACATATTTGTTATGGGAATAGGTAGTGGAGGCACAGTCTCTGGGGTTGGACAATATCTTAAATCCAAAAATCCTAATGTTAAGATATATGGAGTGGAGCCAAGTGAAAGCAATGTGCTGAATGGTGGTAAACCTGGTCCTCATCATATAACTGGCAATGGAGTTGGATTCAAACCAGACATATTGGACATGGATGTTATGGAAAAAGTTCTTGAAGTTAGCAGTGAAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATGGTAGGGATATCATCTGGAGCTAACACAGTTGCAGCTCTCAGATTGGCTCAGCTGCCTGAGAACAAAGGCAAACTTATTGTGACTGTTCATCCAAGTTTCGGCGAACGATACCTGTCATCTGTCCTGTTCCAAGAGCTTCGTCAAGAAGCTGAAAACATGCAGCCAGTAGCAGTTGATTAA

>Glyma18g46920.2   sequence type=CDS   gene model=Glyma18g46920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCCTCATGAGCACCATCCTCATGCAAAGGTCTTCTTCTACTTCACTTGCTGCTGGGAGGTTGTTCTCCACAACAACAGCAACCATTATTGATTCCCCTTCACTTGCTCAGAGAATCAGAGATTTGCCTAAGGACCTCCCTGGAACCAACATCAAGAAACATGTTTCTCAGCTCATTGGGAGGACTCCACTTGTTTATCTTAACAAAGTCACTGAAGGATGTGGAGCTTATGTTGCTGTCAAGCAAGAGATGATGCAACCTACTGCCAGCATCAAAGACAGACCAGCATATGCAATGATCACAGATGCTGAGGAAAAGAATCTGATAACTCCTGGAAAGACAACTCTGATTGAGCCCACGTCAGGCAATATGGGTATCAGCATGGCATTTATGGCCGCCATGAAGGGATACAAGATGGTTTTGACCATGCCCTCTTACACAAGCTTGGAAAGAAGGGTGACCATGAGAGTGTTTGGAGCTGAATTAATCCTCACTGATCCAGCCAAAGGAATGGGAGGAACAGTAAAGAAGGCTTATGAACTTTTGGAAAACACACCAAATGCCCACATGCTGCAACAATTTTCAAACCCTGCCAATACTCAGGTGCATTTTGAAACAACAGGTCCTGAGATATGGGAGGATACAAATGGACAAGTTGACATATTTGTTATGGGAATAGGTAGTGGAGGCACAGTCTCTGGGGTTGGACAATATCTTAAATCCAAAAATCCTAATGTTAAGATATATGGAGTGGAGCCAAGTGAAAGCAATGTGCTGAATGGTGGTAAACCTGGTCCTCATCATATAACTGGCAATGGAGTTGGATTCAAACCAGACATATTGGACATGGATGTTATGGAAAAAGTTCTTGAAGTTAGCAGTGAAGATGCAGTTAACATGGCTAGGGTGTTGGCATTGAAGGAAGGACTCATGGTAATCTTCAAAAGACAATGTTGTAAACTTAAACAATGA

Predicted protein sequences of Glyma18g46920

Limit To All Plant Sequences

>Glyma18g46920.1   sequence type=predicted peptide   gene model=Glyma18g46920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLMSTILMQRSSSTSLAAGRLFSTTTATIIDSPSLAQRIRDLPKDLPGTNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRVFGAELILTDPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIVTVHPSFGERYLSSVLFQELRQEAENMQPVAVD*

>Glyma18g46920.2   sequence type=predicted peptide   gene model=Glyma18g46920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLMSTILMQRSSSTSLAAGRLFSTTTATIIDSPSLAQRIRDLPKDLPGTNIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRVFGAELILTDPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARVLALKEGLMVIFKRQCCKLKQ*

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