Report for Sequence Feature Glyma18g46850
Feature Type: gene_model
Chromosome: Gm18
Start: 56539649
stop: 56542126
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g46850
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G46000 AT
Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mesoderm development candidate 2 (InterPro:IPR019330); Has 31 Blast hits to 31 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18921194-18922047 REVERSE LENGTH=208
SoyBase E_val: 2.00E-50 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF10185 PFAM
Chaperone for wingless signalling and trafficking of LDL receptor
JGI ISS
UniRef100_I1N3R8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3R8_SOYBN
SoyBase E_val: 2.00E-143 ISS
UniRef100_Q8H087 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q8H087_ORYSJ
SoyBase E_val: 4.00E-45 ISS
Expression Patterns of Glyma18g46850
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g46850
Paralog Evidence Comments
Glyma09g39420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g46850 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g234400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g46850
Coding sequences of Glyma18g46850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g46850.1 sequence type=CDS gene model=Glyma18g46850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACCTTCCAACCCGTCCCCACTCTCCTTCTCTTCCTCCTCCTCGCGTCTGCAAATTCCCATTTTGCCCTCGCCGGAAAGCGCAAGGTCCACATCCCCGACGAGTTGGACGACGTGTTCGACGACGAGGAGGACGACGCGTGGCGAGAATGGGGCAAGAAACCCGAACCCTCTTTCCCTCCCTCCGATATCTCCAAGCTCGATCCCTCGCAGATCCAGCAGGAGATGATGAAGCGCCACGCCGGACCCGTGATCGGATTCGTCAAGCTCCGGTCAGGGACTCGCCGGACTCCGGACATGGTAGCTGAATTTGCAATGAAATGGACACATGTTCTGAGAACTGGAGCTGTTGGAGTAAGGTTTATGGGTGTTGATCTGAATACAATCATGTTCAACTTGGAAAGCATCAAAGACTTGGAAGAGTTGAAGGAATTTGTCTTGGACCAATCAGAGGCTTATGAGATCAAAATGGGGGATCAATTTTTTCGAAGACCTGGAGATCCACCTCTTGATGAAGTTATTGAGAAGCACAATAGTGAGAAAGGCAAAGCAGATAATGCTGATTCAGAGGAAATTGATCCAAATGTTAAAACAGAGTTGTAA
Predicted protein sequences of Glyma18g46850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g46850.1 sequence type=predicted peptide gene model=Glyma18g46850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTFQPVPTLLLFLLLASANSHFALAGKRKVHIPDELDDVFDDEEDDAWREWGKKPEPSFPPSDISKLDPSQIQQEMMKRHAGPVIGFVKLRSGTRRTPDMVAEFAMKWTHVLRTGAVGVRFMGVDLNTIMFNLESIKDLEELKEFVLDQSEAYEIKMGDQFFRRPGDPPLDEVIEKHNSEKGKADNADSEEIDPNVKTEL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
