Glyma18g46830 - SoyBase

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Report for Sequence Feature Glyma18g46830

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56531111
stop:	56534812
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45990	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 312 Blast hits to 312 proteins in 90 species: Archae - 0; Bacteria - 131; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). \| chr2:18919402-18921043 FORWARD LENGTH=268	SoyBase	E_val: 4.00E-159	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0010264	GO-bp	Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6TN79	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TN79_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O82790	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT2G45990 protein n=1 Tax=Arabidopsis thaliana RepID=O82790_ARATH	SoyBase	E_val: 2.00E-156	ISS

Expression Patterns of Glyma18g46830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46830

Paralog	Evidence	Comments
Glyma09g39441	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g234200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g46830

Limit To All Plant Sequences

>Glyma18g46830.2   sequence type=transcript   gene model=Glyma18g46830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTTAAAGATGAACTTCCATAGTTTTTCGTGTCAGGTGCGACCAGTAGTGGAAACTGGATATGAAAACGTTTTACTTGTGAGATTGTTGCTTGAGAGCAGAACACCAACCATCCGGAAGTCTTCGGTTGCAGAGGGGCTAACAGTTGAGGGTATATTGGAGAACTGGTCAAAGTTGAAGCCTATTATCATGGAAGAATGGGATGAGAAGAGGGATGATCTGATAGATCTTTTTGGAAAGGTCAGAGATGAATGGTTGGAGCAGGATTTTGCTACTTGGATTGGTGCAAACAGATTATATCCTGGTGTTTCTGATGCATTAAAATTTGCAAGCTCGAGAGTGTACATTGTCACCACAAAACAGAGCCGCTTTGCTGATGCTTTACTCCGAGAGCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATCCCCAGAATTCATGTTCTTGAGCTCTCCAACTTCAGCAAGAAGTTGAAATAGGGGTCTTCATTGGATTGTCAACTGTCAATCGTTGAACCAAATATTTTTCTTCCAACTCATTTATAAGCAATAACAAGTTTCTAGTGAACACAATCTTTCTACTCAGAAATTCTCTCCTTTTCGTCTTGTGAAACTGCAATAATTGGGTCGAGAGCTTTGTTGTCTTTACTAGACCTGCCCAACTTGAACTTGAATAAGATGGTTCAAACCCATAAGTTACAGTAATTTGTACTCTCTTAGAGGAAATGAAAATTGGTGAAATTCTTGGGACGTGTCTGACAAATTCCTTACCAATGTTCATAGTCACAAGGTTCCTTTAGGTATAAGTACATCTGCAAAATCAACTATTTGTAGAACCAAGTAGTATATTCTTCCTCTCATTCTCTCATAAGCTGAAAATTTTGAAAACTAAATACTACTTTTGTTTCCTTTTATCTGTCTACTTAGAGTATAAAAA

Coding sequences of Glyma18g46830

Limit To All Plant Sequences

>Glyma18g46830.1   sequence type=CDS   gene model=Glyma18g46830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGAGCTTTACGCGTTGGACTTCGATGGAGTCATATGTGATAGCTGCGGAGAAAGCTCTCTCTCTGCTCTCAAGGCTGCCAAAGTGAGATGGCCTGGTTTGTTTGATGGGGTGGATTCAACCACAGAAAATTGGATTATTGACCAGATGCACACAGTGCGACCAGTAGTGGAAACTGGATATGAAAACGTTTTACTTGTGAGATTGTTGCTTGAGAGCAGAACACCAACCATCCGGAAGTCTTCGGTTGCAGAGGGGCTAACAGTTGAGGGTATATTGGAGAACTGGTCAAAGTTGAAGCCTATTATCATGGAAGAATGGGATGAGAAGAGGGATGATCTGATAGATCTTTTTGGAAAGGTCAGAGATGAATGGTTGGAGCAGGATTTTGCTACTTGGATTGGTGCAAACAGATTATATCCTGGTGTTTCTGATGCATTAAAATTTGCAAGCTCGAGAGTGTACATTGTCACCACAAAACAGAGCCGCTTTGCTGATGCTTTACTCCGAGAGCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATCCCCAGAATTCATGTTCTTGAGCTCTCCAACTTCAGCAAGAAGTTGAAATAG

>Glyma18g46830.2   sequence type=CDS   gene model=Glyma18g46830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTTCCATAGTTTTTCGTGTCAGGTGCGACCAGTAGTGGAAACTGGATATGAAAACGTTTTACTTGTGAGATTGTTGCTTGAGAGCAGAACACCAACCATCCGGAAGTCTTCGGTTGCAGAGGGGCTAACAGTTGAGGGTATATTGGAGAACTGGTCAAAGTTGAAGCCTATTATCATGGAAGAATGGGATGAGAAGAGGGATGATCTGATAGATCTTTTTGGAAAGGTCAGAGATGAATGGTTGGAGCAGGATTTTGCTACTTGGATTGGTGCAAACAGATTATATCCTGGTGTTTCTGATGCATTAAAATTTGCAAGCTCGAGAGTGTACATTGTCACCACAAAACAGAGCCGCTTTGCTGATGCTTTACTCCGAGAGCTTGCCGGAGTGACCATACCACCTGAAAGAATATATGGCCTTGGAACTGGTCCTAAGGTAGAAGTTCTGAAGCAGCTACAGAAAAAGCCAGAGCACCAAGGACTGACACTGCACTTTGTTGAGGATCGGCTAGCTACCTTAAAAAATGTCATCAAAGAGCCTGAGTTAGACCAATGGAATTTGTATCTTGGTAATTGGGGTTACAACACCCAGAAAGAAAGAGAGGAAGCTGCTGCTATCCCCAGAATTCATGTTCTTGAGCTCTCCAACTTCAGCAAGAAGTTGAAATAG

Predicted protein sequences of Glyma18g46830

Limit To All Plant Sequences

>Glyma18g46830.1   sequence type=predicted peptide   gene model=Glyma18g46830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGELYALDFDGVICDSCGESSLSALKAAKVRWPGLFDGVDSTTENWIIDQMHTVRPVVETGYENVLLVRLLLESRTPTIRKSSVAEGLTVEGILENWSKLKPIIMEEWDEKRDDLIDLFGKVRDEWLEQDFATWIGANRLYPGVSDALKFASSRVYIVTTKQSRFADALLRELAGVTIPPERIYGLGTGPKVEVLKQLQKKPEHQGLTLHFVEDRLATLKNVIKEPELDQWNLYLGNWGYNTQKEREEAAAIPRIHVLELSNFSKKLK*

>Glyma18g46830.2   sequence type=predicted peptide   gene model=Glyma18g46830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNFHSFSCQVRPVVETGYENVLLVRLLLESRTPTIRKSSVAEGLTVEGILENWSKLKPIIMEEWDEKRDDLIDLFGKVRDEWLEQDFATWIGANRLYPGVSDALKFASSRVYIVTTKQSRFADALLRELAGVTIPPERIYGLGTGPKVEVLKQLQKKPEHQGLTLHFVEDRLATLKNVIKEPELDQWNLYLGNWGYNTQKEREEAAAIPRIHVLELSNFSKKLK*

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