Glyma18g46820 - SoyBase

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Report for Sequence Feature Glyma18g46820

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56524633
stop:	56528171
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45980	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00355.2); Has 93 Blast hits to 90 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:18917680-18918569 REVERSE LENGTH=25	SoyBase	E_val: 9.00E-64	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0043231	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
UniRef100_C6TEL9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TEL9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O82775	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=O82775_ARATH	SoyBase	E_val: 4.00E-61	ISS

Expression Patterns of Glyma18g46820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46820

Paralog	Evidence	Comments
Glyma09g39450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g234100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g46820

Limit To All Plant Sequences

>Glyma18g46820.1   sequence type=CDS   gene model=Glyma18g46820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAACAATGAGGATGGAAGGGATAAGACTACTCGTGGGAATGAATGGGAGGTTGTATCTCTGACAGCATCGACATATGCAGCTGCTCCTGGTCCTGATGAAGTTGAGATGAAGGATGATGGGAACGAAGATGTATATGGGCAAGATGAAGGAGAAACGTCAAATGCTTTATTTATGTCTCGTCACTTTGTCTTTCCTCCCAGTCAGCATGAAAACTTGCCCGTGGAACCTGACTATGGTGAGATTCATGATGATTCTGGAGACAAAGATGTTGCCTCTGAAGAGACTCCTGAAGAAGTGACCATACCAAGTGGAAAGGATGAAGAAAACTTGACATTACCAGGATTGGAAGTTTCAGAGGAGTTTGAGGGCATGCGGTATTTTGACGAGAAAATCAACAGATTATCTGTTCGTGGTAAACAGTTTGAGGAAAGTACAACTCTACCAGCATTTGGTTTGACTGAAAAGGGGGAGAGCATGTATGACCCTGCAAAATACACTTCTTTTGACAGTGAAACTGCTATTGGTGGCATAACAGCTTATGGTGAAAGCATAGTTGATCCTGAAACAACTGAATCCGCAGAGCAAGGGTCAAACGTATCTCCTGATCTATCATTGTCAAACTACTCTTCCAAAGATAATGAATACAACTCCTCAGATCTTCCTTGTGGAGCTTGGTGGAAGCGGAGAGCTGCCTCCTTATATGCTCATGCAAAAGAGGCAAATGCATTCTGGTCTGTCTTCATTGCAGCTGCTGTGATGGGTCTTGTAATGCTTGGTCAACGCTGGCAGCAGGAAAGAGCTTTACAACTTAAATGGCAAATCAGTATAAATGATGAGGCGAGGAGCAGGGTGCTTGCTCCCATATATCGACTCAAAGATGTGATTGTTGGTGGCAACCGCCGTGGCTCCTTGATCAGGGGAAGCTCCTCTGGTGAAAGTTAA

Predicted protein sequences of Glyma18g46820

Limit To All Plant Sequences

>Glyma18g46820.1   sequence type=predicted peptide   gene model=Glyma18g46820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANNEDGRDKTTRGNEWEVVSLTASTYAAAPGPDEVEMKDDGNEDVYGQDEGETSNALFMSRHFVFPPSQHENLPVEPDYGEIHDDSGDKDVASEETPEEVTIPSGKDEENLTLPGLEVSEEFEGMRYFDEKINRLSVRGKQFEESTTLPAFGLTEKGESMYDPAKYTSFDSETAIGGITAYGESIVDPETTESAEQGSNVSPDLSLSNYSSKDNEYNSSDLPCGAWWKRRAASLYAHAKEANAFWSVFIAAAVMGLVMLGQRWQQERALQLKWQISINDEARSRVLAPIYRLKDVIVGGNRRGSLIRGSSSGES*

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