Glyma18g46760 - SoyBase

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Report for Sequence Feature Glyma18g46760

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56492876
stop:	56500922
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01650	AT	Annotation by Michelle Graham. TAIR10: SIGNAL PEPTIDE PEPTIDASE-LIKE 4 \| chr1:233188-237647 REVERSE LENGTH=540	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
KOG2442	KOG	Uncharacterized conserved protein, contains PA domain	JGI		ISS
PTHR12174	Panther	SIGNAL PEPTIDE PEPTIDASE	JGI		ISS
PTHR12174:SF30	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF02225	PFAM	PA domain	JGI		ISS
PF04258	PFAM	Signal peptide peptidase	JGI		ISS
UniRef100_G7LBR2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Signal peptide peptidase-like 2B n=1 Tax=Medicago truncatula RepID=G7LBR2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N3R1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3R1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g46760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46760

Paralog	Evidence	Comments
Glyma09g39500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g233600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g46760

Limit To All Plant Sequences

>Glyma18g46760.2   sequence type=transcript   gene model=Glyma18g46760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAACACCCATTAACTAAATTAAATAAACAAAATAAAAAAAATAAAGTTAAAACTTGTGTGTCTGTTTTAGTGTTTTCTCTCTCTCTCCCTCTCCACCCCAATTCCCATTGTACGTTCTTCTTCTTCTTTTCTTTCTTTCCAAAATAAAATCTTTTACCCTTCACACCCCCACCCCTTTGGGTTTCTCTCCTCAATTTTGCATCTGGCGGCTTCTCAGTTCTCACCACCATCATGGTTTCACTTGGAGCTACCTGTGCTCTGTGCTGTTCTATGTTCATGGTGTTTGTCACTTTGAGTTTGGCTGGGGACATAGTACACCCTGATAGTATTGCTCCCAGAAGGCCTGGCTGTGACAACAACTTTGTCCTGGTTAAAGTCCCTACTTGGATTGATGGTGTGGAAAGCTGTGAGTATGTTGGCGTTGGTGCAAGATTTGGCCCTACATTAGAATCAAAAGAAAAACATGCTAACCATACTAGAGTTGCGATAGCGGACCCTCCTGATTGTTGTAGCAAGCCTAAGAATAAGCTCACTGGCGAGATCATTTTGGTGCACCGAGGACAATGTAGTTTCACAACCAAGGCAAATATAGCTGAAGAAGCTGGTGCTTCAGCCATCCTCATTATAAATTATCGTACAGAACTTTTCAAGATGGTTTGTGAAGCGAATGAAACTGATGTTGATATTGGAATACCTGCTGTCATGCTTCCACAAGATGCTGGTGAAAACTTGAAAAATCACATACTAAACAATTCAGTAGTGTCGGTGCAGTTGTATTCTCCACTGCGTCCATTGGTTGATGTTGCAGAAGTGTTTTTATGGCTTATGGCTGTCGGTACCATTCTCTGTGCTTCTTACTGGTCTGCCTGGACTGCAAGAGAGTCTGCCATTGAGCAGGAGAAGCTATTAAAGGATGCTTCAGATGAATACATAAATGCAGAGAATGCTGGTTCTAGTGCATATGTGGAAATCAGTACTGCAGCGGCAATATCATTTGTTGTGATTGCTTCTTGTTTCTTGGTTATGCTTTACAAATTAATGGCATATTGGTTTGTTGAAGTTCTGGTGGTTTTATTTTGCATTGGTGGGGTTGAGGGACTACAAACTTGCTTGGTGGCTCTGTTATCATGTTTCAAATGGTTCCAGCATGCTGCACAAACATTTGTGAAAGTACCTTTCTTTGGTGCTGTATCATATCTGACAGTTGCTGTTACTCCCTTCTGCATTGTGTTTGCTGTGCTTTGGGGAGTTTATCGCCGTGTATCATTTGCTTGGATTGGTCAAGATATTCTTGGCATCACATTGATAATTACAGTTCTTCAGATTGTGCGGATACCAAATCTCAAGGTCGGAACTGTTCTTCTCAGTTGTGCCTTCCTATACGACATCTTCTGGGTGTTTGTCTCTAAATGGTGGTTCCATGAGAGTGTGATGATAGTGGTAGCTCGAGGTGATAGGAGTGGAGAAGATGGTATCCCTATGCTACTCAAGATACCACGTATGTTTGATCCCTGGGGTGGTTACAGCATCATTGGTTTTGGGGACATCATCTTACCAGGGCTTCTAGTAGCATTTTCACTAAGGTTGAATAGAAAATCATACATAAATGATCCTATTCATCATCTTGTACTCCTTACAAAAACATTTTGGATTGATGAAGACAATGCTTTGTGCCTAGTTAATGGTTCATGAACTTGATTTTTCTAATGACTAACTATATACAGGTATGATTGGTTGGCAAAGAAGAACCTTCGAGATGGGTACTTCTTGTGGGCAATGACTGCTTATGGTTTAGGTATGCTATGTTTGATCTGAGGGCAGTTTTCATTAGATAAATAGAATGTTAGCAGAGTAATTTTCTTTGCAAGTGTTT

Coding sequences of Glyma18g46760

Limit To All Plant Sequences

>Glyma18g46760.1   sequence type=CDS   gene model=Glyma18g46760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCACTTGGAGCTACCTGTGCTCTGTGCTGTTCTATGTTCATGGTGTTTGTCACTTTGAGTTTGGCTGGGGACATAGTACACCCTGATAGTATTGCTCCCAGAAGGCCTGGCTGTGACAACAACTTTGTCCTGGTTAAAGTCCCTACTTGGATTGATGGTGTGGAAAGCTGTGAGTATGTTGGCGTTGGTGCAAGATTTGGCCCTACATTAGAATCAAAAGAAAAACATGCTAACCATACTAGAGTTGCGATAGCGGACCCTCCTGATTGTTGTAGCAAGCCTAAGAATAAGCTCACTGGCGAGATCATTTTGGTGCACCGAGGACAATGTAGTTTCACAACCAAGGCAAATATAGCTGAAGAAGCTGGTGCTTCAGCCATCCTCATTATAAATTATCGTACAGAACTTTTCAAGATGGTTTGTGAAGCGAATGAAACTGATGTTGATATTGGAATACCTGCTGTCATGCTTCCACAAGATGCTGGTGAAAACTTGAAAAATCACATACTAAACAATTCAGTAGTGTCGGTGCAGTTGTATTCTCCACTGCGTCCATTGGTTGATGTTGCAGAAGTGTTTTTATGGCTTATGGCTGTCGGTACCATTCTCTGTGCTTCTTACTGGTCTGCCTGGACTGCAAGAGAGTCTGCCATTGAGCAGGAGAAGCTATTAAAGGATGCTTCAGATGAATACATAAATGCAGAGAATGCTGGTTCTAGTGCATATGTGGAAATCAGTACTGCAGCGGCAATATCATTTGTTGTGATTGCTTCTTGTTTCTTGGTTATGCTTTACAAATTAATGGCATATTGGTTTGTTGAAGTTCTGGTGGTTTTATTTTGCATTGGTGGGGTTGAGGGACTACAAACTTGCTTGGTGGCTCTGTTATCATGTTTCAAATGGTTCCAGCATGCTGCACAAACATTTGTGAAAGTACCTTTCTTTGGTGCTGTATCATATCTGACAGTTGCTGTTACTCCCTTCTGCATTGTGTTTGCTGTGCTTTGGGGAGTTTATCGCCGTGTATCATTTGCTTGGATTGGTCAAGATATTCTTGGCATCACATTGATAATTACAGTTCTTCAGATTGTGCGGATACCAAATCTCAAGGTCGGAACTGTTCTTCTCAGTTGTGCCTTCCTATACGACATCTTCTGGGTGTTTGTCTCTAAATGGTGGTTCCATGAGAGTGTGATGATAGTGGTAGCTCGAGGTGATAGGAGTGGAGAAGATGGTATCCCTATGCTACTCAAGATACCACGTATGTTTGATCCCTGGGGTGGTTACAGCATCATTGGTTTTGGGGACATCATCTTACCAGGGCTTCTAGTAGCATTTTCACTAAGGTATGATTGGTTGGCAAAGAAGAACCTTCGAGATGGGTACTTCTTGTGGGCAATGACTGCTTATGGTTTAGGTCTCCTTATCACATACGTGGCTTTGAACTTAATGGATGGACATGGTCAACCAGCTTTGCTTTATATAGTCCCATTTACACTTGGAACCTTTTTGTCATTGGGAAAGAAGAGAGGTGAACTCAAGGTTTTATGGACAAGAGGGGAACCAAAAATACCTTGCCCTCACATCCAAGAGAATCAATCAACAAACCAGTAA

>Glyma18g46760.2   sequence type=CDS   gene model=Glyma18g46760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCACTTGGAGCTACCTGTGCTCTGTGCTGTTCTATGTTCATGGTGTTTGTCACTTTGAGTTTGGCTGGGGACATAGTACACCCTGATAGTATTGCTCCCAGAAGGCCTGGCTGTGACAACAACTTTGTCCTGGTTAAAGTCCCTACTTGGATTGATGGTGTGGAAAGCTGTGAGTATGTTGGCGTTGGTGCAAGATTTGGCCCTACATTAGAATCAAAAGAAAAACATGCTAACCATACTAGAGTTGCGATAGCGGACCCTCCTGATTGTTGTAGCAAGCCTAAGAATAAGCTCACTGGCGAGATCATTTTGGTGCACCGAGGACAATGTAGTTTCACAACCAAGGCAAATATAGCTGAAGAAGCTGGTGCTTCAGCCATCCTCATTATAAATTATCGTACAGAACTTTTCAAGATGGTTTGTGAAGCGAATGAAACTGATGTTGATATTGGAATACCTGCTGTCATGCTTCCACAAGATGCTGGTGAAAACTTGAAAAATCACATACTAAACAATTCAGTAGTGTCGGTGCAGTTGTATTCTCCACTGCGTCCATTGGTTGATGTTGCAGAAGTGTTTTTATGGCTTATGGCTGTCGGTACCATTCTCTGTGCTTCTTACTGGTCTGCCTGGACTGCAAGAGAGTCTGCCATTGAGCAGGAGAAGCTATTAAAGGATGCTTCAGATGAATACATAAATGCAGAGAATGCTGGTTCTAGTGCATATGTGGAAATCAGTACTGCAGCGGCAATATCATTTGTTGTGATTGCTTCTTGTTTCTTGGTTATGCTTTACAAATTAATGGCATATTGGTTTGTTGAAGTTCTGGTGGTTTTATTTTGCATTGGTGGGGTTGAGGGACTACAAACTTGCTTGGTGGCTCTGTTATCATGTTTCAAATGGTTCCAGCATGCTGCACAAACATTTGTGAAAGTACCTTTCTTTGGTGCTGTATCATATCTGACAGTTGCTGTTACTCCCTTCTGCATTGTGTTTGCTGTGCTTTGGGGAGTTTATCGCCGTGTATCATTTGCTTGGATTGGTCAAGATATTCTTGGCATCACATTGATAATTACAGTTCTTCAGATTGTGCGGATACCAAATCTCAAGGTCGGAACTGTTCTTCTCAGTTGTGCCTTCCTATACGACATCTTCTGGGTGTTTGTCTCTAAATGGTGGTTCCATGAGAGTGTGATGATAGTGGTAGCTCGAGGTGATAGGAGTGGAGAAGATGGTATCCCTATGCTACTCAAGATACCACGTATGTTTGATCCCTGGGGTGGTTACAGCATCATTGGTTTTGGGGACATCATCTTACCAGGGCTTCTAGTAGCATTTTCACTAAGGTTGAATAGAAAATCATACATAAATGATCCTATTCATCATCTTGTACTCCTTACAAAAACATTTTGGATTGATGAAGACAATGCTTTGTGCCTAGTTAATGGTTCATGA

Predicted protein sequences of Glyma18g46760

Limit To All Plant Sequences

>Glyma18g46760.1   sequence type=predicted peptide   gene model=Glyma18g46760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSLGATCALCCSMFMVFVTLSLAGDIVHPDSIAPRRPGCDNNFVLVKVPTWIDGVESCEYVGVGARFGPTLESKEKHANHTRVAIADPPDCCSKPKNKLTGEIILVHRGQCSFTTKANIAEEAGASAILIINYRTELFKMVCEANETDVDIGIPAVMLPQDAGENLKNHILNNSVVSVQLYSPLRPLVDVAEVFLWLMAVGTILCASYWSAWTARESAIEQEKLLKDASDEYINAENAGSSAYVEISTAAAISFVVIASCFLVMLYKLMAYWFVEVLVVLFCIGGVEGLQTCLVALLSCFKWFQHAAQTFVKVPFFGAVSYLTVAVTPFCIVFAVLWGVYRRVSFAWIGQDILGITLIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRMFDPWGGYSIIGFGDIILPGLLVAFSLRYDWLAKKNLRDGYFLWAMTAYGLGLLITYVALNLMDGHGQPALLYIVPFTLGTFLSLGKKRGELKVLWTRGEPKIPCPHIQENQSTNQ*

>Glyma18g46760.2   sequence type=predicted peptide   gene model=Glyma18g46760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSLGATCALCCSMFMVFVTLSLAGDIVHPDSIAPRRPGCDNNFVLVKVPTWIDGVESCEYVGVGARFGPTLESKEKHANHTRVAIADPPDCCSKPKNKLTGEIILVHRGQCSFTTKANIAEEAGASAILIINYRTELFKMVCEANETDVDIGIPAVMLPQDAGENLKNHILNNSVVSVQLYSPLRPLVDVAEVFLWLMAVGTILCASYWSAWTARESAIEQEKLLKDASDEYINAENAGSSAYVEISTAAAISFVVIASCFLVMLYKLMAYWFVEVLVVLFCIGGVEGLQTCLVALLSCFKWFQHAAQTFVKVPFFGAVSYLTVAVTPFCIVFAVLWGVYRRVSFAWIGQDILGITLIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDRSGEDGIPMLLKIPRMFDPWGGYSIIGFGDIILPGLLVAFSLRLNRKSYINDPIHHLVLLTKTFWIDEDNALCLVNGS*

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