Glyma18g46716 - SoyBase

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Report for Sequence Feature Glyma18g46716

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56423951
stop:	56429872
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46716

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61370	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3245) \| chr3:22707796-22708380 FORWARD LENGTH=127	SoyBase	E_val: 1.00E-26	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF11595	PFAM	Protein of unknown function (DUF3245)	JGI		ISS
UniRef100_B9RWB5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RWB5_RICCO	SoyBase	E_val: 3.00E-27	ISS
UniRef100_C6T0G9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T0G9_SOYBN	SoyBase	E_val: 2.00E-91	ISS

Expression Patterns of Glyma18g46716

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g46716 not represented in the dataset	Glyma18g46716 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46716

Paralog	Evidence	Comments
Glyma09g39541	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46716 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma18g46716

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g46716

Limit To All Plant Sequences

>Glyma18g46716.2   sequence type=transcript   gene model=Glyma18g46716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTCCATCTTCACTGTTCTTCTATTGCGATTCACAGAAAACACCACCAACTCAACACAGTCATCATCGTCACTACAAAAAAAAAATAATAAAAAAAACACAGAGTTTAACCCTCGACCACACTACAGAGATCCTTCTTCTTCTACTTTGTTCCTCTGTTTCTCTCTCTTACTTTCTCACTCTTTCCGTCAAAGTTTGCAATTTTTCTTCCCAGTAGGCAAACACGGCATTGGCCACCTGACCCTCCACCACGCGAACACGACAGACTTCTTTGTATCTTCTTTCCGTCAAATTTCCCAAATTTACTTTCCGGGGCACAAAGAGCTTGAAATGAGTGTCACAGAAACACCAAAGAAAACCGGTGCCCCCCAAATTGTTAAGTTGGACAAGGCATTGAAATTGGCAGAGTTATGGGTAAATAATATGAGCAAAGATGCAGATGATGATAGAACAAATGCGGATGTAGAGGGTCGACCTTCTAGGCTTGGTCTAGGTGCAAAAGTTTCACGCCAATCAAAATTTGTGCCTTCAGATGACCCTGTTGAAAGGAAATTGTATGCCAAGTTGAATGCTGAAAAAAGAAAAGCAGCTAATATTGCTAAAGAGTCTGCCACAATTGCAAGAGATGCTTTAGATGACGATGAAGACAATGAAGACTTAGATAGCAGAGCTAATGCATTTACCAAGAGGAAGGCAACAGCTCCTTTGATCTCGTCTATGTTGCGAAATAAGAAGCAGAAGTGACATTTAATAATGAGTTATTTTTTTCTGTAAGGCTGTAAATTATCACATAGTTTGCATTTGCCTTGCAGGAATTTTTCCTTCAACCAAGTGTAATACATGGGAATTTCATCGAACATAGTTATGTACTTGAGGAAAAAAAGATAATTTTACTAGTTTATGGCCTATTCTATTCCCATCCACATTTTTTTACATTAAATACTAGATGAATATTTGTGTTGTTTTATGAGTTATAGTGACTTGGCTAATTACATATTGTCACACAATTTGTTTATTTATTAACTGAATGAACATTTGTTCAAAACAACCATTTTACA

>Glyma18g46716.3   sequence type=transcript   gene model=Glyma18g46716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTCCATCTTCACTGTTCTTCTATTGCGATTCACAGAAAACACCACCAACTCAACACAGTCATCATCGTCACTACAAAAAAAAAATAATAAAAAAAACACAGAGTTTAACCCTCGACCACACTACAGAGATCCTTCTTCTTCTACTTTGTTCCTCTGTTTCTCTCTCTTACTTTCTCACTCTTTCCGTCAAAGTTTGCAATTTTTCTTCCCAGGGCACAAAGAGCTTGAAATGAGTGTCACAGAAACACCAAAGAAAACCGGTGCCCCCCAAATTGTTAAGTTGGACAAGGCATTGAAATTGGCAGAGTTATGGGTAAATAATATGAGCAAAGATGCAGATGATGATAGAACAAATGCGGATGTAGAGGGTCGACCTTCTAGGCTTGGTCTAGGTGCAAAAGTTTCACGCCAATCAAAATTTGTGCCTTCAGATGACCCTGTTGAAAGGAAATTGTATGCCAAGTTGAATGCTGAAAAAAGAAAAGCAGCTAATATTGCTAAAGAGTCTGCCACAATTGCAAGAGATGCTTTAGATGACGATGAAGACAATGAAGACTTAGATAGCAGAGCTAATGCATTTACCAAGAGGAAGGCAACAGCTCCTTTGATCTCGTCTATGTTGCGAAATAAGAAGCAGAAGTGACATTTAATAATGAGTTATTTTTTTCTGTAAGGCTGTAAATTATCACATAGTTTGCATTTGCCTTGCAGGAATTTTTCCTTCAACCAAGTGTAATACATGGGAATTTCATCGAACATAGTTATGTACTTGAGGAAAAAAAGATAATTTTACTAGTTTATGGCCTATTCTATTCCCATCCACATTTTTTTACATTAAATACTAGATGAATATTTGTGTTGTTTTATGAGTTATAGTGACTTGGCTAATTACATATTGTCACACAATTTGTTTATTTATTAACTGAATGAACATTTGTTCAAAACAACCATTTTACA

Coding sequences of Glyma18g46716

Limit To All Plant Sequences

>Glyma18g46716.1   sequence type=CDS   gene model=Glyma18g46716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTCCATCTTCACTGTTCTTCTATTGCGATTCACAGAAAACACCACCAACTCAACACAGTCATCATCGTCACTACAAAAAAAAAATAATAAAAAAAACACAGAGTTTAACCCTCGACCACACTACAGAGATCCTTCTTCTTCTACTTTGTTCCTCTGTTTCTCTCTCTTACTTTCTCACTCTTTCCGTCAAAGTTTGCAATTTTTCTTCCCAGGTTTGTGTAGAGTATAGCTTGGATTTGACGTTAAAGCTGAGATTTTTGGACGATTCAAGTGTAGGCAAACACGGCATTGGCCACCTGACCCTCCACCACGCGAACACGACAGACTTCTTTGTATCTTCTTTCCGTCAAATTTCCCAAATTTACTTTCCGGGGCACAAAGAGCTTGAAATGAGTGTCACAGAAACACCAAAGAAAACCGGTGCCCCCCAAATTGTTAAGTTGGACAAGGCATTGAAATTGGCAGAGTTATGGGTAAATAATATGAGCAAAGATGCAGATGATGATAGAACAAATGCGGATGTAGAGGGTCGACCTTCTAGGCTTGGTCTAGGTGCAAAAGTTTCACGCCAATCAAAATTTGTGCCTTCAGATGACCCTGTTGAAAGGAAATTGTATGCCAAGTTGAATGCTGAAAAAAGAAAAGCAGCTAATATTGCTAAAGAGTCTGCCACAATTGCAAGAGATGCTTTAGATGACGATGAAGACAATGAAGACTTAGATAGCAGAGCTAATGCATTTACCAAGAGGAAGGCAACAGCTCCTTTGATCTCGTCTATGTTGCGAAATAAGAAGCAGAAGTGA

>Glyma18g46716.2   sequence type=CDS   gene model=Glyma18g46716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTCCATCTTCACTGTTCTTCTATTGCGATTCACAGAAAACACCACCAACTCAACACAGTCATCATCGTCACTACAAAAAAAAAATAATAAAAAAAACACAGAGTTTAACCCTCGACCACACTACAGAGATCCTTCTTCTTCTACTTTGTTCCTCTGTTTCTCTCTCTTACTTTCTCACTCTTTCCGTCAAAGTTTGCAATTTTTCTTCCCAGTAGGCAAACACGGCATTGGCCACCTGACCCTCCACCACGCGAACACGACAGACTTCTTTGTATCTTCTTTCCGTCAAATTTCCCAAATTTACTTTCCGGGGCACAAAGAGCTTGAAATGAGTGTCACAGAAACACCAAAGAAAACCGGTGCCCCCCAAATTGTTAAGTTGGACAAGGCATTGAAATTGGCAGAGTTATGGGTAAATAATATGAGCAAAGATGCAGATGATGATAGAACAAATGCGGATGTAGAGGGTCGACCTTCTAGGCTTGGTCTAGGTGCAAAAGTTTCACGCCAATCAAAATTTGTGCCTTCAGATGACCCTGTTGAAAGGAAATTGTATGCCAAGTTGAATGCTGAAAAAAGAAAAGCAGCTAATATTGCTAAAGAGTCTGCCACAATTGCAAGAGATGCTTTAGATGACGATGAAGACAATGAAGACTTAGATAGCAGAGCTAATGCATTTACCAAGAGGAAGGCAACAGCTCCTTTGATCTCGTCTATGTTGCGAAATAAGAAGCAGAAGTGA

>Glyma18g46716.3   sequence type=CDS   gene model=Glyma18g46716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTCCATCTTCACTGTTCTTCTATTGCGATTCACAGAAAACACCACCAACTCAACACAGTCATCATCGTCACTACAAAAAAAAAATAATAAAAAAAACACAGAGTTTAACCCTCGACCACACTACAGAGATCCTTCTTCTTCTACTTTGTTCCTCTGTTTCTCTCTCTTACTTTCTCACTCTTTCCGTCAAAGTTTGCAATTTTTCTTCCCAGGGCACAAAGAGCTTGAAATGAGTGTCACAGAAACACCAAAGAAAACCGGTGCCCCCCAAATTGTTAAGTTGGACAAGGCATTGAAATTGGCAGAGTTATGGGTAAATAATATGAGCAAAGATGCAGATGATGATAGAACAAATGCGGATGTAGAGGGTCGACCTTCTAGGCTTGGTCTAGGTGCAAAAGTTTCACGCCAATCAAAATTTGTGCCTTCAGATGACCCTGTTGAAAGGAAATTGTATGCCAAGTTGAATGCTGAAAAAAGAAAAGCAGCTAATATTGCTAAAGAGTCTGCCACAATTGCAAGAGATGCTTTAGATGACGATGAAGACAATGAAGACTTAGATAGCAGAGCTAATGCATTTACCAAGAGGAAGGCAACAGCTCCTTTGATCTCGTCTATGTTGCGAAATAAGAAGCAGAAGTGA

Predicted protein sequences of Glyma18g46716

Limit To All Plant Sequences

>Glyma18g46716.1   sequence type=predicted peptide   gene model=Glyma18g46716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
PPSSLFFYCDSQKTPPTQHSHHRHYKKKIIKKTQSLTLDHTTEILLLLLCSSVSLSYFLTLSVKVCNFSSQVCVEYSLDLTLKLRFLDDSSVGKHGIGHLTLHHANTTDFFVSSFRQISQIYFPGHKELEMSVTETPKKTGAPQIVKLDKALKLAELWVNNMSKDADDDRTNADVEGRPSRLGLGAKVSRQSKFVPSDDPVERKLYAKLNAEKRKAANIAKESATIARDALDDDEDNEDLDSRANAFTKRKATAPLISSMLRNKKQK*

>Glyma18g46716.2   sequence type=predicted peptide   gene model=Glyma18g46716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SSIFTVLLLRFTENTTNSTQSSSSLQKKNNKKNTEFNPRPHYRDPSSSTLFLCFSLLLSHSFRQSLQFFFPVGKHGIGHLTLHHANTTDFFVSSFRQISQIYFPGHKELEMSVTETPKKTGAPQIVKLDKALKLAELWVNNMSKDADDDRTNADVEGRPSRLGLGAKVSRQSKFVPSDDPVERKLYAKLNAEKRKAANIAKESATIARDALDDDEDNEDLDSRANAFTKRKATAPLISSMLRNKKQK*

>Glyma18g46716.3   sequence type=predicted peptide   gene model=Glyma18g46716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SSIFTVLLLRFTENTTNSTQSSSSLQKKNNKKNTEFNPRPHYRDPSSSTLFLCFSLLLSHSFRQSLQFFFPGHKELEMSVTETPKKTGAPQIVKLDKALKLAELWVNNMSKDADDDRTNADVEGRPSRLGLGAKVSRQSKFVPSDDPVERKLYAKLNAEKRKAANIAKESATIARDALDDDEDNEDLDSRANAFTKRKATAPLISSMLRNKKQK*

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