Glyma18g46630 - SoyBase

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Report for Sequence Feature Glyma18g46630

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56337850
stop:	56345047
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45880	AT	Annotation by Michelle Graham. TAIR10: beta-amylase 7 \| chr2:18878674-18881824 REVERSE LENGTH=691	SoyBase	E_val: 0	ISS
GO:0000272	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process	SoyBase	N/A	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0048831	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of shoot development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016161	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-amylase activity	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PF01373	PFAM	Glycosyl hydrolase family 14	JGI		ISS
PF05687	PFAM	Plant protein of unknown function (DUF822)	JGI		ISS
UniRef100_J7I638	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-amylase 6 n=1 Tax=Citrus trifoliata RepID=J7I638_PONTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E2BB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E2BB related cluster n=1 Tax=unknown RepID=UPI000233E2BB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g46630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46630

Paralog	Evidence	Comments
Glyma09g39603	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g232400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g46630

Limit To All Plant Sequences

>Glyma18g46630.1   sequence type=CDS   gene model=Glyma18g46630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTGATATGCAGAGGCTTGTTGGAACGAGTGAGGATGATGAAGAAATGGGAATGGATGTGAAAGATGAGGATGATGACGATGATGATTATGAGGAAAATGGAGGTGAGCAGGGAAATGCTTCAGTATCAGGGATGGTAGAGATTGATGGTGGGAATGGGATAGGAACTGCCACTGATGACAACAGGTTTCAGCAGCACCAGCAGTTTCAAGAGCAAGTAGGCACCCCAGGTGGAGGTACTCGAAGATCTAGGCCGCTAGAAGAGAAAGAGAGAACAAAGCTAAGAGAGAGGCGCCGGAGGGCCATCACTGCAAGGATCTTGGCGGGGCTTCGCAGGCATGGCAACTACAATCTAAGAGTTAGGGCTGACATAAATGATGTCATTGCTGCTCTAGCAAGGGAAGCTGGATGGGTGGTTCTTCCAGATGGTACTACTTTTCCCTCAAGATCTCAGGTTCAAAAGCCTGCTGGTGGTAATTCTACAATTGTCACTTCATCATCTTCCCATGCGGCTTCACAACAGACTCCATCTGCTTCTCTCAGGGGAGTTGCTTCTGGCTATAGGAGCCCTTTAGAGTATAATGCATGTCAAACAAAAAGTGTTTTTATGCCAACTCCGTCTCCTTATGGTCTATCCTCAAGTTCCCGGTCTCAAACATCTATGGTGGGGGATGGAGAAGCACAAAGAGACAATCGTCCTCTGATTGGTGGTTCAATGGATAATGCTGATGATAAGCAGATTGCTGACTTACCCCCCAGATTACCAGAGCGTGATTTGGCTGGTACCCCATATGTTCCAGTTTATGTGATGCTACCGTTAGGGGTGATCAATATTAAATGTGAGCTAGTTGATCCGGATGGTCTACTAAAGCAGCTGAAGGTGTTGAAATCAGTACATGTTGATGGTGTTATGGTAGACTGTTGGTGGGGAATAGTGGAGGCACATGCTCCACAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGAGAGCTTAAGCTTAAGCTGCAGGTTGTGATGTCATTTCATGAATGTGGAGGCAATTTTGGTGATGATGTTTGTATTCCATTACCCCATTGGGTTGCTGAGATTGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAGGGAAGGCACAACCCTGAATGTCTTTCTTGGGGAATAGATAAGGAACGGGTTTTAAGAGGCCGTACTGCTTTGGAGGTTTACTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAATATTTTGAGGATGGGTTAATCTCTATGATTGAAGTTGGACTGGGTCCATGTGGAGAGCTAAGATACCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGCTATGATCAGTATATGTTGAAAAGTCTTAGGAAAGCAGCAGAAGTAAGGGGTCACGCTATTTGGGCTAGAGGGCCAGATAATGCTGGTACCTATAATTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTGATTGATCATGGAAACCGGGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCTTGCATTGCTGCAAAGTTATCGGGTATTTACTGGTGGTACAAGACTGCAAGTCATGCTGCCGAATTAACCGCTGGGTATTATAACCCATGCAATCGTGATGGTTATGCTGCAATTATGACAATGTTAAAGACAAATGGAATCAACTTAAACATTCCTTGTGTTGACTTGCACACATTGAACCAACATGAGGGCTTTCCAGAGACCTTTGCAGATCCCGAGGGACTAGTCTGGCAAGTGTTGAATGCCGGGTGGGAAGTTGACCTACCAGTTACCAGTCAGAATGGATTTCCTTGCCTAAACAGAGTTGGCTATAACAAGGTTTTGGATAATGCCAAGCCCATGAATGATCCAGATGGAAGGCACTTTTCATCTTTTACTTACCTGAGGCTTAGTTCACTTCTCATGGAACGACAAAACTTCATAGAGTTTGAAAGATTTGTCAAGAGAATGCATGGGGAAGCTGTTCTTGATCTTCAGGTATAA

Predicted protein sequences of Glyma18g46630

Limit To All Plant Sequences

>Glyma18g46630.1   sequence type=predicted peptide   gene model=Glyma18g46630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATDMQRLVGTSEDDEEMGMDVKDEDDDDDDYEENGGEQGNASVSGMVEIDGGNGIGTATDDNRFQQHQQFQEQVGTPGGGTRRSRPLEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQVQKPAGGNSTIVTSSSSHAASQQTPSASLRGVASGYRSPLEYNACQTKSVFMPTPSPYGLSSSSRSQTSMVGDGEAQRDNRPLIGGSMDNADDKQIADLPPRLPERDLAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLKVLKSVHVDGVMVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTALEVYFDFMRSFRVEFDEYFEDGLISMIEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEVRGHAIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLIDHGNRVLSLAKLAFEGSCIAAKLSGIYWWYKTASHAAELTAGYYNPCNRDGYAAIMTMLKTNGINLNIPCVDLHTLNQHEGFPETFADPEGLVWQVLNAGWEVDLPVTSQNGFPCLNRVGYNKVLDNAKPMNDPDGRHFSSFTYLRLSSLLMERQNFIEFERFVKRMHGEAVLDLQV*

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