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Report for Sequence Feature Glyma18g46600

Feature Type:gene_model
Chromosome:Gm18
Start:56313091
stop:56316038
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g46600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G01730AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:271002-271872 FORWARD LENGTH=224 SoyBaseE_val: 9.00E-30ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_C6SYV1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYV1_SOYBN SoyBaseE_val: 3.00E-138ISS
UniRef100_Q7XPS9UniRef Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0065O17.1 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XPS9_ORYSJ SoyBaseE_val: 3.00E-12ISS

Expression Patterns of Glyma18g46600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g46600 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g231900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g46600
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g46600
>Glyma18g46600.1   sequence type=CDS   gene model=Glyma18g46600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGCGAAACCAGCGATGGGTCCTCCTCCTCCTCCTGCTCCTCCCACTACGAAGAAGAGGCCACTGGAAGACTCCAATGCCCACTCCAATTACTTCAAGATTCGCGCTGTTATTCGAGACCTTCGTCCTCACTTTCTCGAGGTTCTCCGAACTCCAGACTACAAAAATTGCAAGGCATCCCATGAAATTCAAGAACAGCTGAAGATTGTGGTCAAGTTATACGAGAATATGAAAGCAGATGCGGCTTCACTAGCAAAGTCTAAGAATGTGCAAGATGGCCAGATGAAGGCTGGCCAGAACATGGATCAGAAAACACTGAAAGAGCAGCAACCTCAACATGGCAAGCAGAGTCAAGTAGAGAAATCATTTGCACGGCCATCTGAAATTAAGCTCACTCCACCAGCTCCTGGCTTCCAGAAGCAGCTGGTTGAAGAAACTCAGACACAAGGGACATATGTAGTTGGAGGATCTGCTTTTGGCTGGAATTTCATCACTTTTTCAGGCAAGGAGCCTGTGTATTATGGTAGGACTAAGGAACAATTTCGATCTGCAAAAGTGACCGAGTAA
Predicted protein sequences of Glyma18g46600
>Glyma18g46600.1   sequence type=predicted peptide   gene model=Glyma18g46600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEAKPAMGPPPPPAPPTTKKRPLEDSNAHSNYFKIRAVIRDLRPHFLEVLRTPDYKNCKASHEIQEQLKIVVKLYENMKADAASLAKSKNVQDGQMKAGQNMDQKTLKEQQPQHGKQSQVEKSFARPSEIKLTPPAPGFQKQLVEETQTQGTYVVGGSAFGWNFITFSGKEPVYYGRTKEQFRSAKVTE*






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