Glyma18g46580 - SoyBase

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Report for Sequence Feature Glyma18g46580

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56303572
stop:	56304134
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF00228	PFAM	Bowman-Birk serine protease inhibitor family	JGI		ISS
UniRef100_A4PIB8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Trypsin inhibitor n=1 Tax=Apios americana RepID=A4PIB8_9FABA	SoyBase	E_val: 1.00E-35	ISS
UniRef100_I1N3P3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N3P3_SOYBN	SoyBase	E_val: 1.00E-76	ISS

Expression Patterns of Glyma18g46580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46580

Paralog	Evidence	Comments
Glyma09g39621	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g231700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g46580

Limit To All Plant Sequences

>Glyma18g46580.1   sequence type=CDS   gene model=Glyma18g46580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAGTTGAAGAAGGTGGCATTGGTGAAGGTAGCTTTGTTGCTTTTCCTGTTAGGGTTCAGTGCAACCACTGCAGATGCTACTCGCTTCGACCCACGTTCCTTCATTACTCAGGTGCTCCCCAACAATTACTATGTAAAAATCAAATCCACAGCCACTGCATGTTGTGATCTTTGTCTTTGCACAAAATCATACCCTCCCCAGTGCAATTGTGTAGATGAGAGCGAGACAGGCTGCCACTCATGTTGCAAAAATTGCATTTGCAATAAGAAATTTCCTCGGACGTGTTATTGTTCAGATATAACCAACTTCTGCTATGACAAATGTAACTCAACTGAAGCCAATTAA

Predicted protein sequences of Glyma18g46580

Limit To All Plant Sequences

>Glyma18g46580.1   sequence type=predicted peptide   gene model=Glyma18g46580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMELKKVALVKVALLLFLLGFSATTADATRFDPRSFITQVLPNNYYVKIKSTATACCDLCLCTKSYPPQCNCVDESETGCHSCCKNCICNKKFPRTCYCSDITNFCYDKCNSTEAN*

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