Glyma18g46540 - SoyBase

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Report for Sequence Feature Glyma18g46540

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56251139
stop:	56259212
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45850	AT	Annotation by Michelle Graham. TAIR10: AT hook motif DNA-binding family protein \| chr2:18871901-18873457 REVERSE LENGTH=348	SoyBase	E_val: 5.00E-104	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF02178	PFAM	AT hook motif	JGI		ISS
PF03479	PFAM	Domain of unknown function (DUF296)	JGI		ISS
UniRef100_B9RDQ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDQ4_RICCO	SoyBase	E_val: 1.00E-150	ISS
UniRef100_I1N3P0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3P0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g46540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46540

Paralog	Evidence	Comments
Glyma09g39650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g231300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g46540

Limit To All Plant Sequences

>Glyma18g46540.2   sequence type=transcript   gene model=Glyma18g46540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAGAAGGAGAGAGAAAGTGAAAAAAAAACCTTTTTTTTTAGAGAGAGAAAGAGAGGGTAGCCCTAGAAAAATATGCAACCGGATAAGGACTTTTGCAGCTGAGACACTGCAAAAAGAGTTATATAGAGAGAGAAAAGAAAAAGTATTTTTTTTTATATATATTTTATCCTTTCAATTTTGATGTTTTCTTTTTTTATTTATTTAATATCTTTTTTCCATTGTTGTGGAGTAATTTGCTTCTTTGCAGTGCACACTGACACAGTGACACAGTGGTTCTCTCACCTCTCCTTCTCTGTGTAACTCTGCCACCACTCTTCATTTCCCCAAGAGAAAAAGAAAAAGGAAAAGAAAAAAACTGTTCAACTTTTTTTCAACTGAATCAATCACTAGCTTCCATTTCTTCACAGGTGGAACTGTGAATGTGCACCACAGCTTTTTGATCCTGTTCCTAAAATTTTCCTGTGAAAGATTCTGAAGGCAATTGAAGTAAATGCCATGGATCGTGGGGACCAAATGGCGTTATCCGGGTCTTACTATATGCAGCAAAGAGGAATACCTGGATCTGGAGCACCACCTGAGTTACATATTTCGCCTAATATGCGTCCAATCTCTAATCCAAATTTACCATTTCAATCCAGCATTGGTGGTGGTACCATTGGATCCACATTGCCATTGGAATCTTCAGCAATTTCAGCTCATGGTGTCAATGTGGGAGCTCCTACTGGGGCACCTCCAGGGGAACCTGTTAAGAGGAAGAGAGGAAGGCCTAGGAAATATGGAACCGACGGAAGTGTGTCATTGGCATTGACTCCAACTCCAACATCATCTAGCTATCCTGGAGCCTTGACACAAAGCCAGAAACGGGGCAGAGGGCGCCCACCCGGGACTGGGAAGAAACAGCAATTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATAATCAATATTGCAAGTGGAGAAGACATTACAACAAAAATCATGGCATTTTCTCAGCAGGGAGCTAGAGCTGTATGCATTTTGTCAGCCAATGGTGCTGTCTCTACTGTCACACTTCGTCAGCCATCAACTTCAGGTGGCACTGTCACATACGAGGGGCGCTTTGAGATAGTGTGTCTGTCAGGCTCTTACTTGGTCACCGATAATGGTGGCTCACGCAATCGAACTGGTGGATTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGGTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAAGACAAAGAACAAGAAAAAGGAATCCTCAGAAGGTTCAGAAGTTGCTGTGGAGTCAGATCACCAGGGAGTTCATAATCCAGTTTCACTGAATAGCAGCATCTCACCAAATCAAAACCTTCCTCCAACCCCCCCATCTTTAAATCCTTGGTCGACATCGCGTCCATTGGACATGCGTAATTCCCATGTTGACATCGATTTAATGCGTGGGTGACACATTGTTGAATATACACTAGTGCTGTGTATATATATTTCAGATTCATGGTCGCTCATCTAATTTTTGTTGTAGTAGTAAAATGACAGAATGGGAAGTACCAACAGCAGAGTAGAGCCAGCTGACTTTTGCAAATTGATAAATCTCACTTATATCCATCCACCCTTGATGATTATTGACTTGGGGTTGTACTCATATTTTTGTAGCTGTGAGGAATTTTCAATTTGAAGGTTGTATGTTCCTGATTGGTAATGATACAATTTGTCTTATTTGGAAAAATAATTGACATTGGGCTAGATGTTTTATGTGGTTTAGGAGCATCGATTGTTACATAATATCATGTGATTTTTGTCATAGAATTGTCTTCTAGAAGGCAATGACAAGGGGAACATGAAGATTTATTGCTGATAATGCATGATGTAAAATCATTTTGTATTCTAATGGTGTGAGGTTGTAGAGTTTCTTATTATAGCTATAGTAGCTGTCCCTTTGGTGCCAGTAGTTAGTTGTGCCCTGCTATGCACTCATGCATTGTACACTCCATTTCCCTGTCCAACCATCCATAAAATTTAGTGCTAATAAAAGGGTAAAAGGCAAGAAAGAAAATTAAAAAGGATATTGTAATCATGGACTATAGTACCACTTTTTGTCTTTTTGCCCATATGATAAT

Coding sequences of Glyma18g46540

Limit To All Plant Sequences

>Glyma18g46540.1   sequence type=CDS   gene model=Glyma18g46540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGTGGGGACCAAATGGCGTTATCCGGGTCTTACTATATGCAGCAAAGAGGAATACCTGGATCTGGAGCACCACCTGAGTTACATATTTCGCCTAATATGCGTCCAATCTCTAATCCAAATTTACCATTTCAATCCAGCATTGGTGGTGGTACCATTGGATCCACATTGCCATTGGAATCTTCAGCAATTTCAGCTCATGGTGTCAATGTGGGAGCTCCTACTGGGGCACCTCCAGGGGAACCTGTTAAGAGGAAGAGAGGAAGGCCTAGGAAATATGGAACCGACGGAAGTGTGTCATTGGCATTGACTCCAACTCCAACATCATCTAGCTATCCTGGAGCCTTGACACAAAGCCAGAAACGGGGCAGAGGGCGCCCACCCGGGACTGGGAAGAAACAGCAATTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATAATCAATATTGCAAGTGGAGAAGACATTACAACAAAAATCATGGCATTTTCTCAGCAGGGAGCTAGAGCTGTATGCATTTTGTCAGCCAATGGTGCTGTCTCTACTGTCACACTTCGTCAGCCATCAACTTCAGGTGGCACTGTCACATACGAGGGGCGCTTTGAGATAGTGTGTCTGTCAGGCTCTTACTTGGTCACCGATAATGGTGGCTCACGCAATCGAACTGGTGGATTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGGTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAAGACAAAGAACAAGAAAAAGGAATCCTCAGAAGGTTCAGAAGTTGCTGTGGAGTCAGATCACCAGGGAGTTCATAATCCAGTTTCACTGAATAGCAGCATCTCACCAAATCAAAACCTTCCTCCAACCCCCCCATCTTTAAATCCTTGGTCGACATCGCGTCCATTGGACATGCGTAATTCCCATGTTGACATCGATTTAATGCGTGGGTGA

>Glyma18g46540.2   sequence type=CDS   gene model=Glyma18g46540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGTGGGGACCAAATGGCGTTATCCGGGTCTTACTATATGCAGCAAAGAGGAATACCTGGATCTGGAGCACCACCTGAGTTACATATTTCGCCTAATATGCGTCCAATCTCTAATCCAAATTTACCATTTCAATCCAGCATTGGTGGTGGTACCATTGGATCCACATTGCCATTGGAATCTTCAGCAATTTCAGCTCATGGTGTCAATGTGGGAGCTCCTACTGGGGCACCTCCAGGGGAACCTGTTAAGAGGAAGAGAGGAAGGCCTAGGAAATATGGAACCGACGGAAGTGTGTCATTGGCATTGACTCCAACTCCAACATCATCTAGCTATCCTGGAGCCTTGACACAAAGCCAGAAACGGGGCAGAGGGCGCCCACCCGGGACTGGGAAGAAACAGCAATTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATAATCAATATTGCAAGTGGAGAAGACATTACAACAAAAATCATGGCATTTTCTCAGCAGGGAGCTAGAGCTGTATGCATTTTGTCAGCCAATGGTGCTGTCTCTACTGTCACACTTCGTCAGCCATCAACTTCAGGTGGCACTGTCACATACGAGGGGCGCTTTGAGATAGTGTGTCTGTCAGGCTCTTACTTGGTCACCGATAATGGTGGCTCACGCAATCGAACTGGTGGATTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGGTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAAGACAAAGAACAAGAAAAAGGAATCCTCAGAAGGTTCAGAAGTTGCTGTGGAGTCAGATCACCAGGGAGTTCATAATCCAGTTTCACTGAATAGCAGCATCTCACCAAATCAAAACCTTCCTCCAACCCCCCCATCTTTAAATCCTTGGTCGACATCGCGTCCATTGGACATGCGTAATTCCCATGTTGACATCGATTTAATGCGTGGGTGA

Predicted protein sequences of Glyma18g46540

Limit To All Plant Sequences

>Glyma18g46540.1   sequence type=predicted peptide   gene model=Glyma18g46540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRGDQMALSGSYYMQQRGIPGSGAPPELHISPNMRPISNPNLPFQSSIGGGTIGSTLPLESSAISAHGVNVGAPTGAPPGEPVKRKRGRPRKYGTDGSVSLALTPTPTSSSYPGALTQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDITTKIMAFSQQGARAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDNGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFLWGGSKTKNKKKESSEGSEVAVESDHQGVHNPVSLNSSISPNQNLPPTPPSLNPWSTSRPLDMRNSHVDIDLMRG*

>Glyma18g46540.2   sequence type=predicted peptide   gene model=Glyma18g46540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRGDQMALSGSYYMQQRGIPGSGAPPELHISPNMRPISNPNLPFQSSIGGGTIGSTLPLESSAISAHGVNVGAPTGAPPGEPVKRKRGRPRKYGTDGSVSLALTPTPTSSSYPGALTQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDITTKIMAFSQQGARAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDNGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFLWGGSKTKNKKKESSEGSEVAVESDHQGVHNPVSLNSSISPNQNLPPTPPSLNPWSTSRPLDMRNSHVDIDLMRG*

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