Glyma18g46524 - SoyBase

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Report for Sequence Feature Glyma18g46524

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56240784
stop:	56241350
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46524

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_B9RDQ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kiwellin, putative n=1 Tax=Ricinus communis RepID=B9RDQ3_RICCO	SoyBase	E_val: 1.00E-95	ISS
UniRef100_UPI000233E2B6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E2B6 related cluster n=1 Tax=unknown RepID=UPI000233E2B6	SoyBase	E_val: 1.00E-138	ISS

Expression Patterns of Glyma18g46524

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g46524 not represented in the dataset	Glyma18g46524 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46524

Paralog	Evidence	Comments
Glyma09g39656	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46524 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g231100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46524

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g46524

Limit To All Plant Sequences

>Glyma18g46524.1   sequence type=CDS   gene model=Glyma18g46524   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGGTTTATCCCAAATGCATCCTTCATTTTATTAGCCACTCTCATCTTGACAAGTTGTTTTTACTCTGAAGCTCAAAAGTGCCGCCCAAGTGGAAGAATTAGAGGAAAGAAGGCCCCTCCAGGACAATGCAACCAAGAGAATGATTCTGACTGTTGCAAAGAAGGCAAAATGTACACAACATATGAATGTTCACCACCAATGTCAAGCAACACCAAGGCCTATCTCACTCTCAACAGTTTTCAGAAGGGTGGAGATGGTGGTGGCCCTTCAGAATGTGATAACCAGTACCATTCTGACGACACACCGGTTGTGGCACTGTCCACGGGATGGTTCAACCACAAGAGCAGGTGCCTCCACAACATCACCATTAGCGGCAATGGTAGAAGTGTGGTGGCCATGGTGGTTGATCAGTGTGACTCTAGAAAGGGATGTGATGCAGAGCATGACTATCAACCTCCATGTCCCAACAACATTGTTGATGCATCAAAGGCTGTTTGGAAAGCCTTAGGAGTGCCCCTAAATGAATGGGGTGGGTTGGATATTACCTGGTCTGATGCTTGA

Predicted protein sequences of Glyma18g46524

Limit To All Plant Sequences

>Glyma18g46524.1   sequence type=predicted peptide   gene model=Glyma18g46524   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRFIPNASFILLATLILTSCFYSEAQKCRPSGRIRGKKAPPGQCNQENDSDCCKEGKMYTTYECSPPMSSNTKAYLTLNSFQKGGDGGGPSECDNQYHSDDTPVVALSTGWFNHKSRCLHNITISGNGRSVVAMVVDQCDSRKGCDAEHDYQPPCPNNIVDASKAVWKALGVPLNEWGGLDITWSDA*

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