Glyma18g46517 - SoyBase

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Report for Sequence Feature Glyma18g46517

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56235480
stop:	56236881
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46517

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45520	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein \| chr5:18449509-18453012 REVERSE LENGTH=1167	SoyBase	E_val: 2.00E-42	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR23155	Panther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	JGI		ISS
PTHR23155:SF128	Panther	NBS-LRR RESISTANCE PROTEIN RGH1-LIKE (PUTATIVE UNC	JGI		ISS
UniRef100_I1N3N8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N3N8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8LJ95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NBS-LRR resistance protein RGH1-like n=2 Tax=Oryza sativa RepID=Q8LJ95_ORYSJ	SoyBase	E_val: 3.00E-67	ISS

Expression Patterns of Glyma18g46517

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g46517 not represented in the dataset	Glyma18g46517 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46517

Paralog	Evidence	Comments
Glyma09g39670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46517 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g231000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46517

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g46517

Limit To All Plant Sequences

>Glyma18g46517.1   sequence type=CDS   gene model=Glyma18g46517   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGACACATTAGAAGAGGTGGATGGCCATTTTCGCAAGTTGGATAAGAAGAGGTTGGACCAAGAGATGGATGGCATTTGCAAGAGAATAGGGGAATGTGCTCACAAGTTGCTCCCAATGGATGATTATGATGAGGAGGATCACAAGAGTAGTGAAATACTACACTCATCTTCAACCCAACACAACAATCACTTGTTGCTGGAAAGGTATTGCATGCTAAGACAGCAAAGAAGTGTTTGCTTGTTGTCTCTCTTAGTTTTCCCTGAACATGCTATTATAAAGAATTTAAGTACAATTTATTGGTGGATTGGAGAGAGTTATGTTGAAAATACAGAAGATAAAACAGCAGAGGAAGTGGGTGAGGATGTGATTGATGAGCTTTTGAAATTAAATTTGATTGTACCCTATGGTAATGCCAAGTATCCCCTTGTCAATAAATTTCAAATTCATCCTCACATCCTTCCTCTCTTGGAGTCATCAGATCTGTATGAAAAAAGACAACTGCATCTTGGATATTATCTCCAACAATCCATGCTTGCATGTCTAGTACTTGAGCAACAAAAAGTTATACAAGTAGATGGGGTTAGTTCTATTCTTGATGATTATTTGATATTGACTGTTTTTAACGTTGATTCACCTTCCCATCACATTGAAATCGGGAGTCAAAAATTCCTAAAGGACTTAAGGAATCTAAAGACGTTGTTTTATCTTAGCCTTCGTGGGATATCAAGAATATCTGAGCTTCCACCCTCCATTGCTCAACTTGAGAGCCTAGAAATTCTTGATCTCAAAGCTTGCCACAACTTGGAAACACTGCCTAATTATATTTCATCAATGAAACATCTCACACATCTCATTGTATCCCAGTGTTACTTTTTGGAGGGCATGCCAAAGGGGATTGAAAAGCTCACAAATCTCCAAGTTCTCAAGGGATTTGTCATAAAACTAAGGAGACTCAGCATACATATAGGAAGTGAGGCTGTTATCAAAGATGGGGAGTTTGAAAGCTTGGGAGAGTTGTCGGCACTTAAACATCTCAAAATATCATGGGGAGTGTCTGAAACAAGGTACAGTGATTTGCCTCCAACATTGAAAAAGTTGCATCTTGAAGGCTTTCCTGGACAGAAAGTTCCAGAATTCCTGAAGCCTAGCAAGCTTCCCAGTGGATTCAAACAGCTAAAAATAATCGGAGGAAAACTCCAAAGTATGAATGATGATGATGATGTGAACAAGTGGGGCATGGAGATCGTGCATCTCAAGTAG

Predicted protein sequences of Glyma18g46517

Limit To All Plant Sequences

>Glyma18g46517.1   sequence type=predicted peptide   gene model=Glyma18g46517   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLDTLEEVDGHFRKLDKKRLDQEMDGICKRIGECAHKLLPMDDYDEEDHKSSEILHSSSTQHNNHLLLERYCMLRQQRSVCLLSLLVFPEHAIIKNLSTIYWWIGESYVENTEDKTAEEVGEDVIDELLKLNLIVPYGNAKYPLVNKFQIHPHILPLLESSDLYEKRQLHLGYYLQQSMLACLVLEQQKVIQVDGVSSILDDYLILTVFNVDSPSHHIEIGSQKFLKDLRNLKTLFYLSLRGISRISELPPSIAQLESLEILDLKACHNLETLPNYISSMKHLTHLIVSQCYFLEGMPKGIEKLTNLQVLKGFVIKLRRLSIHIGSEAVIKDGEFESLGELSALKHLKISWGVSETRYSDLPPTLKKLHLEGFPGQKVPEFLKPSKLPSGFKQLKIIGGKLQSMNDDDDVNKWGMEIVHLK*

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