Glyma18g46510 - SoyBase

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Report for Sequence Feature Glyma18g46510

Feature Type:	gene_model
Chromosome:	Gm18
Start:	56228795
stop:	56233442
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g46510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G46210	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S5 domain 2-like superfamily protein \| chr3:16976960-16978489 REVERSE LENGTH=239	SoyBase	E_val: 5.00E-131	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000175	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3'-5'-exoribonuclease activity	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG1069	KOG	Exosomal 3'-5' exoribonuclease complex, subunit Rrp46	JGI		ISS
PTHR11953	Panther	RIBONUCLEASE PH RELATED	JGI		ISS
PF01138	PFAM	3' exoribonuclease family, domain 1	JGI		ISS
UniRef100_G7L3K7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Exosome complex exonuclease RRP46 n=1 Tax=Medicago truncatula RepID=G7L3K7_MEDTR	SoyBase	E_val: 5.00E-149	ISS
UniRef100_UPI000233E2B5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E2B5 related cluster n=1 Tax=unknown RepID=UPI000233E2B5	SoyBase	E_val: 2.00E-178	ISS

Expression Patterns of Glyma18g46510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46510

Paralog	Evidence	Comments
Glyma09g39680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g230900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g46510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g46510

Limit To All Plant Sequences

>Glyma18g46510.2   sequence type=transcript   gene model=Glyma18g46510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCACCGTGAATTCTCTGATTTGTCTTGACATTTGCACGTTGCACTCGCTCGCAGCAAAGCTCTCAACTTTACTTTACGATTTCGCTACTTCCAGTTCTAGTAGTCGCAGATTGACAGTGCAGCCTTCCTCTTGTTTCTTCTTTTGAGCAAGTTAAGTTCACTGTTTCAAGTATTTTGGGATCCACAAGGTGGGGACGTAAAGGATTGGGTTTCCGATGGAGACTGACAGACCTGACGGCCGGACTCCCAATCAACTGAGACCCCTGGTCTGCTCCTGCTCCATCCTACATCGATCCCATGGCTCGGCCAGTTGGGCTCAAGGTGAAACTAAAGTGCTTGCTGCAGTTTATGGGCCCAAAGCTGGAACCAAGAAGAGCGAAAACCCCGAAAAAGCATCCATTGAAGTTATTTGGAAACCGAAGACTGGACAAATTGGAAAAGTGGAGAAGGAGTATGAGATGATATTGAAGAGAACTTTGGAAAGCATCTGCATTCGAACAATATATCCCAACACCACCACTTCGGTTATAGTCCAGGTTGTCCACGATGATGGTGCTCTTCTTCCATGTGCAATAAATGCAGCATGCGCTGCACTTGTGGATGCCGGAATTCCCCTAAAACATCTTGCTGTAGCGATATGTTGTTCTGTAACAGATAGTGGCTGTATTATATTGGACCCGACCAAAGATGAAGAGGAGAAAATGAAAGCATTCATCAATTTAGTTTTTCCAAATACAATTGTTTCTGTCCTCCCAGAGGGATCACTGCAGGCGGGTAGTGAGCCTATGGCACATGGAATCATGACATCTATTACACAGGGTGCTATGTCAGTGGATGATTATCTTCACTGCCTAGAGCGAGGGCGTGCTGCTAGTGCAAGATTGTCTGAATTTGTGAGGAAGAACATAGAACTGAAATCTACAAGTGAGGCATCTAAAGCTGGGTGATTTTCCAATCATTTTTGGATGTAGTTTACATATTTGTCTAATTTTTCCCTGCAAGGGCTTGAGAGGAGGGAATTTCTCTACAGGTAGTGCTACATATTTGTCCCATTCATGAAAATATAATTTTTCTTGGTCGATTATAAATTTGCCAAAGCTGGTTTGGTTAGTTCTCAGGAGTACTTCTGAACTTCAGAATACACACATTTTTTATTTGTTTTCTCGTGAGAGTAACCAATAAATGAAAATAGGCTTTGGAGAAAAAACTCTAAACTTGCTACGTCATCGAAAACAAATAAAATATTCAT

Coding sequences of Glyma18g46510

Limit To All Plant Sequences

>Glyma18g46510.1   sequence type=CDS   gene model=Glyma18g46510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACTGACAGACCTGACGGCCGGACTCCCAATCAACTGAGACCCCTGGTCTGCTCCTGCTCCATCCTACATCGATCCCATGGCTCGGCCAGTTGGGCTCAAGGTGAAACTAAAGTGCTTGCTGCAGTTTATGGGCCCAAAGCTGGAACCAAGAAGAGCGAAAACCCCGAAAAAGCATCCATTGAAGTTATTTGGAAACCGAAGACTGGACAAATTGGAAAAGTGGAGAAGGAGTATGAGATGATATTGAAGAGAACTTTGGAAAGCATCTGCATTCGAACAATATATCCCAACACCACCACTTCGGTTATAGTCCAGGTTGTCCACGATGATGGTGCTCTTCTTCCATGTGCAATAAATGCAGCATGCGCTGCACTTGTGGATGCCGGAATTCCCCTAAAACATCTTGCTGATAGTGGCTGTATTATATTGGACCCGACCAAAGATGAAGAGGAGAAAATGAAAGCATTCATCAATTTAGTTTTTCCAAATACAATTGTTTCTGTCCTCCCAGAGGGATCACTGCAGGCGGGTAGTGAGCCTATGGCACATGGAATCATGACATCTATTACACAGGGTGCTATGTCAGTGGATGATTATCTTCACTGCCTAGAGCGAGGGCGTGCTGCTAGTGCAAGATTGTCTGAATTTGTGAGGAAGAACATAGAACTGAAATCTACAAGTGAGGCATCTAAAGCTGGGTGA

>Glyma18g46510.2   sequence type=CDS   gene model=Glyma18g46510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACTGACAGACCTGACGGCCGGACTCCCAATCAACTGAGACCCCTGGTCTGCTCCTGCTCCATCCTACATCGATCCCATGGCTCGGCCAGTTGGGCTCAAGGTGAAACTAAAGTGCTTGCTGCAGTTTATGGGCCCAAAGCTGGAACCAAGAAGAGCGAAAACCCCGAAAAAGCATCCATTGAAGTTATTTGGAAACCGAAGACTGGACAAATTGGAAAAGTGGAGAAGGAGTATGAGATGATATTGAAGAGAACTTTGGAAAGCATCTGCATTCGAACAATATATCCCAACACCACCACTTCGGTTATAGTCCAGGTTGTCCACGATGATGGTGCTCTTCTTCCATGTGCAATAAATGCAGCATGCGCTGCACTTGTGGATGCCGGAATTCCCCTAAAACATCTTGCTGTAGCGATATGTTGTTCTGTAACAGATAGTGGCTGTATTATATTGGACCCGACCAAAGATGAAGAGGAGAAAATGAAAGCATTCATCAATTTAGTTTTTCCAAATACAATTGTTTCTGTCCTCCCAGAGGGATCACTGCAGGCGGGTAGTGAGCCTATGGCACATGGAATCATGACATCTATTACACAGGGTGCTATGTCAGTGGATGATTATCTTCACTGCCTAGAGCGAGGGCGTGCTGCTAGTGCAAGATTGTCTGAATTTGTGAGGAAGAACATAGAACTGAAATCTACAAGTGAGGCATCTAAAGCTGGGTGA

Predicted protein sequences of Glyma18g46510

Limit To All Plant Sequences

>Glyma18g46510.1   sequence type=predicted peptide   gene model=Glyma18g46510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METDRPDGRTPNQLRPLVCSCSILHRSHGSASWAQGETKVLAAVYGPKAGTKKSENPEKASIEVIWKPKTGQIGKVEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPCAINAACAALVDAGIPLKHLADSGCIILDPTKDEEEKMKAFINLVFPNTIVSVLPEGSLQAGSEPMAHGIMTSITQGAMSVDDYLHCLERGRAASARLSEFVRKNIELKSTSEASKAG*

>Glyma18g46510.2   sequence type=predicted peptide   gene model=Glyma18g46510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METDRPDGRTPNQLRPLVCSCSILHRSHGSASWAQGETKVLAAVYGPKAGTKKSENPEKASIEVIWKPKTGQIGKVEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPCAINAACAALVDAGIPLKHLAVAICCSVTDSGCIILDPTKDEEEKMKAFINLVFPNTIVSVLPEGSLQAGSEPMAHGIMTSITQGAMSVDDYLHCLERGRAASARLSEFVRKNIELKSTSEASKAG*

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