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Report for Sequence Feature Glyma18g46470

Feature Type:gene_model
Chromosome:Gm18
Start:56198959
stop:56203869
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g46470
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61260AT Annotation by Michelle Graham. TAIR10: Remorin family protein | chr3:22675403-22676701 REVERSE LENGTH=212 SoyBaseE_val: 3.00E-62ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
PF03763PFAM Remorin, C-terminal region JGI ISS
PF03766PFAM Remorin, N-terminal region JGI ISS
UniRef100_B9RDP4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Remorin, putative n=1 Tax=Ricinus communis RepID=B9RDP4_RICCO SoyBaseE_val: 1.00E-72ISS
UniRef100_C6SW65UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SW65_SOYBN SoyBaseE_val: 4.00E-123ISS

Expression Patterns of Glyma18g46470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46470
ParalogEvidenceComments
Glyma09g39730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46470 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g230500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g46470
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g46470
>Glyma18g46470.1   sequence type=CDS   gene model=Glyma18g46470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGCTGCAATCGAAGTCTGAAACTGCCCCTGCTCCGGCTCCGGTTGTGGCTGAGGTGCCATCGAACGACGCCGTTGCAAAGAAAGCTTCTGAAACAGGGGAATCCAAAGCTATTGTTTCTGTATCCGAGAAGACACCAGTTCCTGCAAACAAGCAAAGCTCAAGAGGATCCATTGATAGAGATATCGCTCTGGCTGAAGTAGAGAAAGAGAAAAAGTTGTCCTATGTGAAGGCATGGGAAGAAAGTGAGAAGGCCAAAGCAGAGAACAGAGCTCAAAAACATCTCTCAGCTATCGCTGCTTGGGAAAACAGCAAAAAGGCAGCTCTTGAAGCTGAGCTTAAAAAATTGGAGGAACAACTGGAGAAAAAGAAAGCAGAATATGGTGAAAAAATGAAGAACAAGGTGGCCTTAGTTCACAAGGAAGCAGAGGAGAAGAGGGCAATGATTGAAGCCAAGCGTGGTGAAGAGATTCTGCAGACAGAGGAAATGGCTGCAAAATACCGAGCAACAGGAACCACTCCAAAGAAGACTATAGGATGCTTTTGA
Predicted protein sequences of Glyma18g46470
>Glyma18g46470.1   sequence type=predicted peptide   gene model=Glyma18g46470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAELQSKSETAPAPAPVVAEVPSNDAVAKKASETGESKAIVSVSEKTPVPANKQSSRGSIDRDIALAEVEKEKKLSYVKAWEESEKAKAENRAQKHLSAIAAWENSKKAALEAELKKLEEQLEKKKAEYGEKMKNKVALVHKEAEEKRAMIEAKRGEEILQTEEMAAKYRATGTTPKKTIGCF*






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