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Report for Sequence Feature Glyma18g46460

Feature Type:gene_model
Chromosome:Gm18
Start:56190166
stop:56192643
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g46460
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61230AT Annotation by Michelle Graham. TAIR10: GATA type zinc finger transcription factor family protein | chr3:22664601-22665503 REVERSE LENGTH=213 SoyBaseE_val: 2.00E-106ISS
GO:0051017GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament bundle assembly SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0015629GO-cc Annotation by Michelle Graham. GO Cellular Compartment: actin cytoskeleton SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0051015GO-mf Annotation by Michelle Graham. GO Molecular Function: actin filament binding SoyBaseN/AISS
KOG1700 KOG Regulatory protein MLP and related LIM proteins JGI ISS
PTHR24206Panther FAMILY NOT NAMED JGI ISS
PTHR24206:SF66Panther JGI ISS
PF00412PFAM LIM domain JGI ISS
UniRef100_G7L3J0UniRef Annotation by Michelle Graham. Most informative UniRef hit: LIM domain protein 2b n=1 Tax=Medicago truncatula RepID=G7L3J0_MEDTR SoyBaseE_val: 7.00E-113ISS
UniRef100_I1N3N3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N3N3_SOYBN SoyBaseE_val: 1.00E-154ISS

Expression Patterns of Glyma18g46460
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g46460 not represented in the dataset
Glyma18g46460 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g46460
ParalogEvidenceComments
Glyma09g39740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g46460 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g230400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g46460
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g46460
>Glyma18g46460.1   sequence type=CDS   gene model=Glyma18g46460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTCACAGGAACTACAGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACATGTTAACTCTTGAAGGTATACCTTACCATAAAAACTGCTTCAGATGCAGTCACTGCAAGGGATACCTAACGATGAACACCTACTCCTCAATGGATGGTGTCCTCTATTGCAAGCCACACTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAAACAGCAAAGTCTTCTGATAAACAAAATGAGACGAATAAGGCCCCCAACAGACTGTCATCCATGTTCAGTGGAACTCTAGACAAATGCTCAGTTTGTTCAAAAACAGTCTATCCTCTGGAAAAGATGACACTGGAAGGGGAATGCTATCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTCACACATTCCTCTTATGCTGCCCTGGATGGTGTCCTCTACTGTAGGCACCATTTCCAACAGCTTTTCATGGAGAAAGGGAACTATCATCATGTACTCCAATCTGCTAACCACAAGAAGAATGTCACTCCTGAACCTGCTGAACCTGCAGCTGAAGGAGATGAAGAGCCACCAAAGCCAGAAGAATCTGATTCTGAGGAACACACAGAAGAAAAGCCTCAAAATGAAGCATAG
Predicted protein sequences of Glyma18g46460
>Glyma18g46460.1   sequence type=predicted peptide   gene model=Glyma18g46460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFTGTTDKCKACDKTVYVVDMLTLEGIPYHKNCFRCSHCKGYLTMNTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSDKQNETNKAPNRLSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQSANHKKNVTPEPAEPAAEGDEEPPKPEESDSEEHTEEKPQNEA*






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