SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G00630 | AT | Annotation by Michelle Graham. TAIR10: K+ efflux antiporter 2 | chr4:261655-267789 REVERSE LENGTH=1174 | SoyBase | E_val: 0 | ISS |
| GO:0006813 | GO-bp | Annotation by Michelle Graham. GO Biological Process: potassium ion transport | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0015079 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: potassium ion transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: potassium:hydrogen antiporter activity | SoyBase | N/A | ISS |
| KOG1650 | KOG | Predicted K+/H+-antiporter | JGI | ISS | |
| PTHR16254 | Panther | POTASSIUM/PROTON ANTIPORTER-RELATED | JGI | ISS | |
| PF00999 | PFAM | Sodium/hydrogen exchanger family | JGI | ISS | |
| PF02254 | PFAM | TrkA-N domain | JGI | ISS | |
| UniRef100_G7L3I8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutathione-regulated potassium-efflux system protein n=1 Tax=Medicago truncatula RepID=G7L3I8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E2B1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E2B1 related cluster n=1 Tax=unknown RepID=UPI000233E2B1 | SoyBase | E_val: 0 | ISS |
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Glyma18g46420 not represented in the dataset |
Glyma18g46420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g39770 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g230100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g46420.2 sequence type=CDS gene model=Glyma18g46420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACATGGATATGGCTGGTAGTTTGCCGCAGTCGAGAGTGTTGCATGGAGGTGTGGGGACGAGTTACAAACGCAGATCAGTAGGTCAGTTAGGTTGCTTTGATTTTAGAGGGAGAGATTTTGGTTGTGCTTCTTTTGGAGACTCGAGAAGTGTTTCGAGATTGCGGAGGAGTGGGATGAATGTTTCTGCTTGTTGGAATAATTCGAGAGTAGTTACTGGTAGGGAGTTTAAGGTTTTGAATCCGAAGAGAAGTTTGTCTTGTAAGAATAATAATCTTTTCATGGGGTCACGAGTGATTTGGTCGAAGTGCCAGGGTAATGATTCTTTAGCTTATGTTAATGGAAATGGCCGGAATGTTGATTATGTGGAAGGTTCGGGTGAGGATGCAGGATTGGGGCCTGTTTCTAGTGCTGAACTGGATGCACCTTTGGAAGAAGAAGAAGAAGGGCAAGCTGAGAGGAAAGAGGCAGGGAGTGAAATAGGATTAGAGGAACTAAGTGTGGATGAACTGAAAGAACTATTGCAAAAGGCCTCGAAGGAGCTAGAAGTAGCTAAAATTAATAGTACCATGTTTGAGGAAAAGGTTAAAAAAATATCAGAGACTGCCATTTCCTTGCATGATGAAGCAGTCAATTCTTGGAACAATGTTAATTCTACCCTTGACACCATCCAAGAAATAGAAAATGAAGAACATACAGCCAAAGAAGCTGTCCAAAATGCAACAATGGCTCTTTCATTAGCCGAGGCAAGGCTTCAAGTAGCCATAGAAACTTTGGAGGCTGCAAAAGAAGTTCTTGATTCAGCACAAGGTTCTAATGAGAGCAATGGTGATAATGACATGGTGGAAGAGGAGCAAGCTCTTTTGGTTGCTCAAGAAGATATCAAGGAATGCCAGGCTAATTTAGCAAATTGTGAGGCAGAGCTGAGGCGCTTGCAAGATAAAAAGGAAGAGGTGCAGAAGGAAGTGAGCAAATTGCAAGAAATTGCTGAAAAGGCTCAGCTGAAAGCGGTGAAAGCTGAAGAGGATGTTACAAACATAATGCTAATGGCAGAGCAAGCTGTTGCCTTTGAACTTGAGGCTACAAAATGTGTAAATGATGCAGAGATTGCCCTACAGCGAGCAGATAAGTCTAATTCTAATTCAAATGCTGATACCATAGAAACTACACAAGCACAAGATGTTGGGGCTGTTTCTGAGGTGGAGAAAGTGGTTCAAGGTTTTTCGGGTGATGTTGTTGAACGACACAGAGATTTGGCAATTGATGGCGAATCTTTGCTTGCCAATTTATCACCTGAGACTTTATCTGATAAAACCAGCCAAATTTTGGAAGACAGAACACAGTCTGATTATTTAAGTGATAATGAGAATGCTGTGCAAACAAAAAAGCAAGAAACACAGAAAGAATTGACCAGAGATAGTTCACCGTTTGCTCCAAAGGCATTATTGAAAAAGTCTTCTCGATTCTTTTCTGCATCATTCTTCTCTTCTGCTGAAGATGGGACTGAGTTCACACCAGCATCAGTCTTCCAGGGCCTTGTGTTATCTGTACAGAAGCAGTTGCCCAAGCTGATATTTGGGTTATTGTTAATGGGAGCAGGGGTTGCCTTCTATTCTAATAGAGTGGAGAGGAATGCTCAGCTGCTTCCACAGGCAGATGTTATTATGACCAGTGTTGAAGAAGTTTCCTCTAGTGCAAAGCCTTTGGTTAGACAACTTCAGAAACTACCCAAGAAAATCAAGAAAATCATTGCATCATTACCTCATCAAGAGGTGAACGAGGAAGAAGCCTCCCTTTTTGACATGCTCTGGTTATTACTTGCCAGTGTTATATTTGTGCCAATATTTCAAAAAATCCCTGGAGGAAGTCCTGTTCTTGGCTACTTGGCTGCTGGTATCTTGATTGGGCCTTATGGTCTCTCTATCATTCGTCACGTTCATGGGACAAAAGCAGTAGCTGAATTTGGAGTTGTTTTCCTTCTATTCAATATTGGCCTGGAGCTCTCGGTTGAAAGGCTTAGTTCAATGAAGAAATATGTCTTTGGATTTGGCTCTGCACAGGTGTTGGCAACTGCTGTAGCTGTTGGCTTGATAGCTCATTATATTTGTGGCCAAGCTGGTCCAGCTGCTATTGTCATTGGGAATGGCCTAGCATTATCATCCACTGCTGTTGTTCTGCAGGTGTTGCAGGAGAGAGGTGAGAGCACTTCACGGCATGGCCGAGCTACTTTTTCTGTGTTACTTTTTCAGGATCTGGCTGTTGTGGTCTTGCTAATACTCATACCTCTTATTTCTCCTAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCTATTGCTGAAGCACTTGGACTGGCTGCTGTTAAGGCAGCAGTTGCCATCACTGCCATAATTGCTGGGGGACGATTGCTCCTTCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCAGAAATTTTCTCAGCTAATACACTCCTTGTTATTCTTGGCACAAGTCTTCTTACAGCCAGGGCAGGACTTTCCATGGCATTGGGAGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTTCCAGTCATCATGGGCGCACTAGGACTCTTAATATGCGGAAAGACTATCTTGGTTTGTTTGATGGGTAGAATGTTTGGGATTTCTCTCATTTCTGCCATCAGAGTTGGTCTTCTTCTTGCTCCTGGTGGGGAGTTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAGCTGTCATCTTTGCTGTTTCTTGTTGTGGGCATTTCAATGGCCATCACACCATGGCTAGCTGCAGGAGGCCAGTTGATTGCTTCCCGTTTTGAGCAGAATGATGTTAGAAGTTTATTGCCGGTAGAAAGTGAGACAGATGATTTGCAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGCCAGATCATTGCCCAACTTCTTTCAGAGCGTCTTATTCCATTTGTCGCACTAGACGTAAGAAGTGATAGAGTGGCAGTTGGGCGTGCTCTGGATCTCCCTGTGTACTTTGGAGATGCTGGTAGTAGAGAGGTCCTACATAAGGTTGGGGCTGAAAGGGCATGTGCTGCAGCAATAACTCTTGATACACCTGGTGCAAATTATAGAACAGTTTGGGCTTTGAGCAAGTACTTCCCAAATGTGAAGACTTTTGTTCGTGCCCATGATGTTGATCATGGATTAAATTTAGAAAAGGCTGGAGCTACTGCTGTTGTCCCGGAGACCTTGGAACCAAGTCTTCAACTAGCAGCTGCTGTGCTTTCTCAGGCTAAACTCCCCACATCAGAGATTGCAGCAACTATAAATGAATTCCGATCTCGACATCTGGCTGAGCTCACAGAGCTGTGTGAAGCAAGTGGAAGTTCTCTTGGTTATGGATATAATAGAACTATGAACAAACCCAAATCTCCATCCCCAGATTCATTAGATGAGACTACAGTCTCCGAAGGGACACTGGCAATATGA
>Glyma18g46420.2 sequence type=predicted peptide gene model=Glyma18g46420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNMDMAGSLPQSRVLHGGVGTSYKRRSVGQLGCFDFRGRDFGCASFGDSRSVSRLRRSGMNVSACWNNSRVVTGREFKVLNPKRSLSCKNNNLFMGSRVIWSKCQGNDSLAYVNGNGRNVDYVEGSGEDAGLGPVSSAELDAPLEEEEEGQAERKEAGSEIGLEELSVDELKELLQKASKELEVAKINSTMFEEKVKKISETAISLHDEAVNSWNNVNSTLDTIQEIENEEHTAKEAVQNATMALSLAEARLQVAIETLEAAKEVLDSAQGSNESNGDNDMVEEEQALLVAQEDIKECQANLANCEAELRRLQDKKEEVQKEVSKLQEIAEKAQLKAVKAEEDVTNIMLMAEQAVAFELEATKCVNDAEIALQRADKSNSNSNADTIETTQAQDVGAVSEVEKVVQGFSGDVVERHRDLAIDGESLLANLSPETLSDKTSQILEDRTQSDYLSDNENAVQTKKQETQKELTRDSSPFAPKALLKKSSRFFSASFFSSAEDGTEFTPASVFQGLVLSVQKQLPKLIFGLLLMGAGVAFYSNRVERNAQLLPQADVIMTSVEEVSSSAKPLVRQLQKLPKKIKKIIASLPHQEVNEEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAVAEFGVVFLLFNIGLELSVERLSSMKKYVFGFGSAQVLATAVAVGLIAHYICGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPVIMGALGLLICGKTILVCLMGRMFGISLISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMAITPWLAAGGQLIASRFEQNDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLSQAKLPTSEIAATINEFRSRHLAELTELCEASGSSLGYGYNRTMNKPKSPSPDSLDETTVSEGTLAI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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